Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1924 ATGTCACGGACTGATAGAATGGCTTCGGATCTTAGCAGAGCTGGTCCCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAAAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGGAAACCCAAGTTTTGCCAGATTCGGCTTTCCAATGATGAATCTGCTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTAAGCCATATTTCTAGAATTATATCTGGACAACGCACGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAAGAATACCAGTCCTTTTCTCTTATCTACAGTGATAGGTCACTGGACTTGATTTGCAAAGACAAAGATGAAGCTGAGGTTTGGTTCAGTGGTCTGAAAGCATTAATATCACGTTGCCATCACCAGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGGGGCTAGTAGTCCCAGAACATACACTAGAAGAAGTTCCCCGTTAAATTCTCCATTTGATAGTAATGAAAGCTTGCAAAAGGACAGTGGGGACCACCTTCGCCTTCATAGCCCCTTTGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCTTTATCTGATGTGATATTGTATTCTGTTCCTCCAAAGGGTTTCTTCCATCCAGATTCTACTAGTGGTTCAGTCCTCTCAATGTCATCAGGAGGATCAGATAGTTTACATGGTCACATGAAAGCAATGGGCATGGATGCTTTTAGAGTGAGTCTATCAAGTGCTGTCAGCTCATCAAGCCAGGGTTCTGGTCATGATGATGGTGACGCCTTAGGAGATGTTTTTATTTGGGGGGAATGCACTGGTGATGGTGTTTTGGGTGGTGGGACTCACCATCTTGGTGGAAAAATGGATTCTCTACTGCCCAAGGCATTGGAATCTGCTGTAGTACTTGATGTACAGAACATAGCTTGTGGTGGACGACATGCTGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATTAGGGGGGAGGCTTGGGCATGGTGTTGACTCTGATGTTCTTCATCCAAAACTTATAGAATCTCTGAGTAATACCAACATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTTTACTTGGGGTGATGGCACCCACAATTATGGTCTTCTGGGACATGGAAATCAAGTAAGCCACTGGGTCCCTAAAAGAGTAATTGGGCCTTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCAGTTGTTTCCTCTGCCGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGGGACAGAAAAAGTGTTGGAATACCGAGAGAAGTAGAGTCCCTTAAGGGGCTTCGTACTGTGCGGGCTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTAGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAAGGTCGACTTGGGCATGGTGGCAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAACCTAACTTTTGTCAAGTTGTGTGTGGACACAGTCTTACTGTTGCACTTACTACCTCAGGCCATGTCTATACCATGGGTAGTTCTGTCTATGGCCAACTAGGAAATCTTCATACTGATGGTAAGTTACCGAAACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCGAGGACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATATAGAGGATAGAAATACTCCAACGTTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAATGGGCCTCTGGTGTTGACCAATCCATGTGTTCTGGCTGTCGTCTGCCTTTTAATTTTAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGAGTCTGTGATAATTGTTACAATAAACTAAGGAAAACCATCGAAACCGATTCTTCGTCTCATTCTTCTCTGAGCAGAAGGGGAAGTATCAATCAAGGGCCACTTGAGTTTAATGATAATGATGATAAATTTGATTCAAGATCTCGAAATCAGCTTGCTAGATTTCCTTCAATGCAATCCTTCAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAATTCAATAGTAGCCGTGTCTCGCCCATTCCAAATGGAGGTTCCCAGTGGGGGGTGTCAAATTTTTCTAAATCTGTCAATCCTATTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACATCATAGTCCACCTCGTTCAACTACTCCAACCCCAACCCTTGGAGGACTCACCTCCCCAAGGATAGGTGTGGATGATGTTAAGAAGACCAACGATAGCCTTAACCAGGAGGTTATTAAATTAAGAACGCAGGTGGAAAATATGACACGCAAGACTCAATTTCAAGAAGTTGAATTGGAGAGAGCAACTAAACAGCTGAAGGAAGCAATAGCATATGCTGGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTACCCAGCTGAAGGACATGGCTGAGAAGCTTCCTGCTGGAGCATCTAGGAATGTGAAATTTCCTTCTGTTGCTTCCTTCGAATCAAATCCTTCTTCTAATGAAGTTATCAATTCTTCTATTGATGGATTAAATTTTCAAGCTGCTAGCCTAGAACCAGACTTAGCGGTATTGAACAACCAATCACTTTCAAATGGATCAAATACCATCAGTAATCGAAGTGCAGGTCACAACAAACAGAGCGAGTCAGATGCAACAACGATTAGAAATGGGAGCAGAACAAAGGAAGGTGAGACTCGTGGTGAAGTTGGATGGGTTGAACAAGATGAGCCTGGAGTGTATATTACATTTACCTCCATTGGAGGTGTTCTGGATCTTAAAAGAGTTCGTTTCAGCCGAAAGCGGTTTAGTGAGAAGCAAGCAGAACAATGGTGGGCCGAGAATCGGGCAAGAATATATGAGAAGTACAATTTACGCATGGCTGAGAAGTCAGCCATTGATGAAACAATCTGTAAATGA 3306 0.4332 MSRTDRMASDLSRAGPVERDIEQAITALKKGACLLKYGRRGKPKFCQIRLSNDESALIWFSGKEEKHLKLSHISRIISGQRTPIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKDEAEVWFSGLKALISRCHHQKWRTESRSDGFPSGASSPRTYTRRSSPLNSPFDSNESLQKDSGDHLRLHSPFESPPKNGLDKALSDVILYSVPPKGFFHPDSTSGSVLSMSSGGSDSLHGHMKAMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGECTGDGVLGGGTHHLGGKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEELGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLFTWGDGTHNYGLLGHGNQVSHWVPKRVIGPLEGIHVSSISCGPWHTAVVSSAGQLFTFGDGTFGVLGHGDRKSVGIPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGGKEAKLVPTCVAALVEPNFCQVVCGHSLTVALTTSGHVYTMGSSVYGQLGNLHTDGKLPKRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTIETDSSSHSSLSRRGSINQGPLEFNDNDDKFDSRSRNQLARFPSMQSFKQVESRSSKKNKKLEFNSSRVSPIPNGGSQWGVSNFSKSVNPIFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPRIGVDDVKKTNDSLNQEVIKLRTQVENMTRKTQFQEVELERATKQLKEAIAYAGEETAKCKAAKEVIKSLTTQLKDMAEKLPAGASRNVKFPSVASFESNPSSNEVINSSIDGLNFQAASLEPDLAVLNNQSLSNGSNTISNRSAGHNKQSESDATTIRNGSRTKEGETRGEVGWVEQDEPGVYITFTSIGGVLDLKRVRFSRKRFSEKQAEQWWAENRARIYEKYNLRMAEKSAIDETICK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1924 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 726 IPR013083 -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 832 865 - -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 786 801 - -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 832 855 - -
Mibi05g1924 1101 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 939 - -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 763 801 - -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 996 1017 - -
Mibi05g1924 1101 FunFam Putative E3 ubiquitin-protein ligase HERC1 659 727 - -
Mibi05g1924 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 377 429 IPR000408 -
Mibi05g1924 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 496 545 IPR000408 -
Mibi05g1924 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 548 597 IPR000408 -
Mibi05g1924 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 602 649 IPR000408 -
Mibi05g1924 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 433 481 IPR000408 -
Mibi05g1924 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 326 374 IPR000408 -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 725 744 - -
Mibi05g1924 1101 Pfam Transcription factor BRX N-terminal domain 914 947 IPR027988 -
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 549 600 IPR000408 -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 141 171 - -
Mibi05g1924 1101 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 996 1030 - -
Mibi05g1924 1101 Pfam FYVE zinc finger 653 719 IPR000306 GO:0046872
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 601 652 IPR000408 -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 139 193 - -
Mibi05g1924 1101 Coils Coil 1100 1101 - -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 309 322 IPR000408 -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 596 617 IPR000408 -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Mibi05g1924 1101 PRINTS Chromosome condensation regulator RCC1 signature 538 556 IPR000408 -
Mibi05g1924 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 487 658 - -
Mibi05g1924 1101 Coils Coil 919 939 - -
Mibi05g1924 1101 CDD PH_PLC_plant-like 19 129 - -
Mibi05g1924 1101 Gene3D - 495 664 IPR009091 -
Mibi05g1924 1101 Gene3D - 246 494 IPR009091 -
Mibi05g1924 1101 SMART fyve_4 651 720 IPR000306 GO:0046872
Mibi05g1924 1101 SMART PH_update 27 131 IPR001849 -
Mibi05g1924 1101 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 657 719 IPR017455 -
Mibi05g1924 1101 SUPERFAMILY PH domain-like 20 128 - -
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 497 548 IPR000408 -
Mibi05g1924 1101 SUPERFAMILY RCC1/BLIP-II 267 654 IPR009091 -
Mibi05g1924 1101 Gene3D - 20 137 IPR011993 -
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 325 IPR000408 -
Mibi05g1924 1101 MobiDBLite consensus disorder prediction 725 751 - -
Mibi05g1924 1101 SUPERFAMILY FYVE/PHD zinc finger 654 724 IPR011011 -
Mibi05g1924 1101 Pfam Unstructured region between BRX_N and BRX domain 955 1025 - -
Mibi05g1924 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 419 429 IPR000408 -
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Mibi05g1924 1101 Coils Coil 863 904 - -
Mibi05g1924 1101 ProSiteProfiles BRX domain profile. 1032 1086 IPR013591 -
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 432 IPR000408 -
Mibi05g1924 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 486 - -
Mibi05g1924 1101 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1085 IPR013591 -
Mibi05g1924 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 377 IPR000408 -
Mibi05g1924 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 312 322 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1924 Mibi-ChrMibi05 25256973 25266613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1924 923 1095 Major Intrinsic Protein MIP AT1G31880 33.516 3.59e-15 76.6