Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1894 ATGGATCTTGTGGTTGCCACGTGGCGAGACAAGGATGGTTTCCTCCTTTCTCACTCCCTCATAGATACCTCAGAAAGCCATCGATTCTGTTTCTTACTGTTTCAAACTTCTGTTTCTGATTCCTGCAGTGTCCAAATTCGCCTATTATCTTGTGGATTGCCCGTTTGCTTAGCCATGAATTTTCCGGGTTGGAATTTTGAGACTGATGCTTTTGTCACCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAACTTGTGGAGCTGATATGGCAAAATGGACAGGTGGTTATGCACAGCCAAACTCAAAGAAAACAAACTGCAAATTCTATTGATTCGAGACAGTTCCAGAAAAACGATCAACCGACGATCAGGACTAATGAGTCGTATGGCAACACGAGTCATTTGATCCAAGAAGATGATGCAATCTCATGGATTCAATATCCACTTGAGGATCCATTGGAACAACAACTATGTTCAAACATTTTCTCTGAACTTCCATCATCTGGACTTGAGTCTGACAAGCCAATAAGGCAACTTGAGGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCCTGCCATGTGACTCCAAGTTCACAAACACAAAATCTAAAACCTTTTTCTCATGAATTATCGGGAAATCCTATGCCTGCTCCAAGAGTTCATTTTCCTGATTCATCTCAGAAAAATATTAATTTTGGTGGATCACAAAATGTCATCAATTTTTCTCAGTTTTCAGAACCCTCCAAAATAGCCTCAACATCTTCTAATGCACAGTCTGAAGATAAAGGTAATGGTAATCTGTTGCAAAACAAGGTCAAAGACTGCTCGGGTATGACAGTTGGTTCAAGTCACTGTGGCAGCAACCAAGTCCCTCTGGATCCTGACATAAGCAGGGCATCAAGCAATGGGGCTTGGACTGCTACTTTATATTCTGAGCCTGAACTCCACAGGGATGGTGTCCAGAAATCAATTCCTCAGAGTGAAAAAGGGAAGTCGGGGGTGTTTGAACCAACTTTGAGTTCATCATCAGATGGCTCGGGCAGTCTTGATAAAACTTGCTCCTGGTCTGCAAGAAGCCATGGCCAAAAAAGGAAAAAGATAGATACAGAAGACTTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCGGCTGTTGAAAACAAGGAAGCTCAGGGGACAAGGCCTTCCCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCGGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGTAACAAGACAGATAAAGCATCAATGTTAGATGAGGCAATTGAATACTTGAAATCACTTCAATTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTTCCTGGAATTCAGCATTATATGTCCCAAATGGGTATGGGAATGGCTCCACCCTCTTTTCCTCCTATTCCCAATCCGGTGCAATTACCAAGAACATCACTTGATCATTCCATGTCAATGGCTCAGACACCAAACCAGTGTTTGATGCGTCAAGCTCCTGTTATGGCCCCCTTTACTTATCAAAATCAGATGCAAAATCAAGCTATTTCAGAGCAATATGCGCGTTATATGGGGTATCAATTTTTGCAAAATGCCTCTCAGCCGATGAATGGATTCAATTATGGATCTCAAGTACAACATAGTCAAACAATGATTCCACCCAGCAGTAGCAGTGGACCCTTGAATGGAGCTTCAACTAATGATAATGATAATTTAAGTGGCAAGATGGGTTAA 1794 0.427 MDLVVATWRDKDGFLLSHSLIDTSESHRFCFLLFQTSVSDSCSVQIRLLSCGLPVCLAMNFPGWNFETDAFVTNQKKPMGPDQELVELIWQNGQVVMHSQTQRKQTANSIDSRQFQKNDQPTIRTNESYGNTSHLIQEDDAISWIQYPLEDPLEQQLCSNIFSELPSSGLESDKPIRQLEEGKYVKFGPYSACHVTPSSQTQNLKPFSHELSGNPMPAPRVHFPDSSQKNINFGGSQNVINFSQFSEPSKIASTSSNAQSEDKGNGNLLQNKVKDCSGMTVGSSHCGSNQVPLDPDISRASSNGAWTATLYSEPELHRDGVQKSIPQSEKGKSGVFEPTLSSSSDGSGSLDKTCSWSARSHGQKRKKIDTEDLEEQSEATEPKSAVENKEAQGTRPSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSQMGMGMAPPSFPPIPNPVQLPRTSLDHSMSMAQTPNQCLMRQAPVMAPFTYQNQMQNQAISEQYARYMGYQFLQNASQPMNGFNYGSQVQHSQTMIPPSSSSGPLNGASTNDNDNLSGKMG 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1894 597 PANTHER TRANSCRIPTION FACTOR PIF3 73 567 IPR044273 GO:0003700|GO:0006355
Mibi05g1894 597 MobiDBLite consensus disorder prediction 317 409 - -
Mibi05g1894 597 MobiDBLite consensus disorder prediction 326 357 - -
Mibi05g1894 597 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 398 465 IPR036638 GO:0046983
Mibi05g1894 597 SMART finulus 407 456 IPR011598 GO:0046983
Mibi05g1894 597 MobiDBLite consensus disorder prediction 362 385 - -
Mibi05g1894 597 MobiDBLite consensus disorder prediction 392 409 - -
Mibi05g1894 597 Gene3D - 397 457 IPR036638 GO:0046983
Mibi05g1894 597 CDD bHLH_AtPIF_like 401 464 - -
Mibi05g1894 597 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 401 450 IPR011598 GO:0046983
Mibi05g1894 597 MobiDBLite consensus disorder prediction 250 271 - -
Mibi05g1894 597 FunFam Basic helix-loop-helix transcription factor 396 459 - -
Mibi05g1894 597 MobiDBLite consensus disorder prediction 559 597 - -
Mibi05g1894 597 Pfam Helix-loop-helix DNA-binding domain 405 451 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1894 Mibi-ChrMibi05 24136166 24140328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1894 76 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.722 1.01e-40 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi05g1894 HLH 2e-14 No_clan