Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1871 ATGGATAATGCAAACGAAGTGTCATCCTCCTTGAGTTTTGCATCATCTTACTTGTCAAATGGGTCAAGTAATCCCAACATATCTGCCTGCACTAGCCATGAGCATGTGGCAAATCTTGAAAATTTGAGCCTCAGTAAGCTGAGTGGAAGCCTTGAGAAGCTATTGATAGATCCTGAATGTGACTATAGTGATGTTGATATTGTTGTTGAGGACAAACCTGTGGGTGTTCATAGGTGTATATTGGCTTCACGTAGTCATTTTTTTCATGAACTTTTTAAGAAAGGGAATGATGGCTCAGTGAAGGAAGGTAAGCCAAAGTATCTCATGTCAGACTTGGTGCCCAATGGCATTGTTGGATACGAAGCATTCGGTGTTTTCTTGCATTATTTGTATACTGGAAAGCTGAAGGCGTCGCCCCCTGAAGTATCAACATGTATTGACGAAACATGTGCACATGATGCATGCAGACCTGCTATTAATTACGCTTTAGAGCTAATGTATGCTTCTGCCACATTTCAGATGAAAGAGCTTGTTTTACTTGTTCAGCGGCGTCTCCTCAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCTATTCTTATGGTTGCCTTCCACTGCCAACTAGACCAGGTTCGGTTACACTGCATCCAAAGATTAGCAAGATCTGACCTTGAGAACACAACTCTGGAAAGAGAGCTTCCACATGAAGTTTTTAATGAAATCAAAACACTCCGACGCAAAGCTCTGGCAGAATCCACCCCTGACGCAATGGAAATGGAACCTTCAAATGAAAAGAGTATCAGGAGAATCCTTAAAGCATTGGACTCTGATGATATTGAGCTGATGAATCTTCTTTTGAAAGAGTCTAGTGTCACTCTAAACGATGCTTATGCCCTACACTATGCTTGTGCCTATTGCGATCCTAAGATTGTTCAAGAAGTTCTTAATCTTGAGTCGGCTGACATAAACCTTACAAATCCTCGAGGGTATTCAGTTCTTCATGTGGCTGCAAGGCGCAAAAATCCAACAATTTTGGTAGCACTGTTGAATAGAGGGGCCTGTGTATCGAATATCACATCAGATGGACAAACAGCTTTTGCAATTTGTCGGAGGATGACAAGGCCCAAGGACTATAATGTGAAAACAGAGCAGGGAAAGGAATCTAACAAAGACAAGCTCTGTGTTGGTCTCCTGGAGAGAGAAATGGGAAGAACTTCAATGTCTGAGAAAGCATCTGTTTCATCAGAGGTAACTGCTGATGACTTGCACATGAGACTTGATTACCTGGAAAATAGAGTTGATTTTGCTAGGCTATTGTTTCCTGCTGAGGCTAAGGTGGCCATGGAAAATGCTGAGGCAGAGTCAACACTGTATGTAAATCGATTGAGGGGCTCAAGTGGTAACCTAAGAGAAGTTGATCTTAATGAAACTCCTTCTATGAGAACCAGAAAACTCCAGTTAAAATTGCAAGCCCTTGTGAAAACAGTTGAGAATGGTCGGCGCTTCTTTCCCCATTGCTCTGAGGTTCTTGATAAGTTTCTGGATGACGATATGCCGGATATCTTCTTCTTAGAGAAGGGTAGTGAACAAGAACAGAGAATCAAGAAGCAACGCTTCATGGAGCTTAAAGATGATGTGCAGAAGGCATTTTATAAGGATATGGCTGGAAGCAATGGTTCAGGTTTTTCCTCCTCAGTTTCTCCCGCATCATCCTCATCTAAGAAAGGAGGGCTCGGCCAAAGGGTGAGGAAAAAGTGA 1761 0.4231 MDNANEVSSSLSFASSYLSNGSSNPNISACTSHEHVANLENLSLSKLSGSLEKLLIDPECDYSDVDIVVEDKPVGVHRCILASRSHFFHELFKKGNDGSVKEGKPKYLMSDLVPNGIVGYEAFGVFLHYLYTGKLKASPPEVSTCIDETCAHDACRPAINYALELMYASATFQMKELVLLVQRRLLNFVEKALVEDVIPILMVAFHCQLDQVRLHCIQRLARSDLENTTLERELPHEVFNEIKTLRRKALAESTPDAMEMEPSNEKSIRRILKALDSDDIELMNLLLKESSVTLNDAYALHYACAYCDPKIVQEVLNLESADINLTNPRGYSVLHVAARRKNPTILVALLNRGACVSNITSDGQTAFAICRRMTRPKDYNVKTEQGKESNKDKLCVGLLEREMGRTSMSEKASVSSEVTADDLHMRLDYLENRVDFARLLFPAEAKVAMENAEAESTLYVNRLRGSSGNLREVDLNETPSMRTRKLQLKLQALVKTVENGRRFFPHCSEVLDKFLDDDMPDIFFLEKGSEQEQRIKKQRFMELKDDVQKAFYKDMAGSNGSGFSSSVSPASSSSKKGGLGQRVRKK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1871 586 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Mibi05g1871 586 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Mibi05g1871 586 SMART BTB_4 63 189 IPR000210 GO:0005515
Mibi05g1871 586 SUPERFAMILY POZ domain 46 187 IPR011333 -
Mibi05g1871 586 FunFam Regulatory protein NPR3 37 221 - -
Mibi05g1871 586 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Mibi05g1871 586 SMART ANK_2a 295 325 IPR002110 GO:0005515
Mibi05g1871 586 SMART ANK_2a 329 361 IPR002110 GO:0005515
Mibi05g1871 586 FunFam regulatory protein NPR3-like 263 403 - -
Mibi05g1871 586 Pfam Ankyrin repeats (3 copies) 278 355 IPR002110 GO:0005515
Mibi05g1871 586 CDD BTB_POZ_NPR_plant 52 176 - -
Mibi05g1871 586 Gene3D - 263 464 IPR036770 -
Mibi05g1871 586 MobiDBLite consensus disorder prediction 558 578 - -
Mibi05g1871 586 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Mibi05g1871 586 PANTHER REGULATORY PROTEIN NPR3 14 574 IPR044292 GO:0009862|GO:2000022|GO:2000031
Mibi05g1871 586 MobiDBLite consensus disorder prediction 557 586 - -
Mibi05g1871 586 Pfam BTB/POZ domain 61 147 IPR000210 GO:0005515
Mibi05g1871 586 Gene3D Potassium Channel Kv1.1; Chain A 27 221 IPR011333 -
Mibi05g1871 586 SUPERFAMILY Ankyrin repeat 269 373 IPR036770 -
Mibi05g1871 586 Pfam NPR1/NIM1 like defence protein C terminal 371 568 IPR021094 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1871 Mibi-ChrMibi05 23792045 23795616 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mibi05g1871 NPR1_like_C 2e-81 No_clan