Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1793 ATGGAGGCTCCAAATGAACTGCAAGTAGTAGCAGAAGAAGGAGGAGGAGGCTCATGTTCATCTCATCATCATCACAATCAACAGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACAAATAGGCAAGTAACTTTCTGTAAGAGACGTAATGGTTTACTCAAGAAAGCTTATGAATTGTCTGTTCTTTGCGATGCTGAAGTCGCCCTTGTCGTCTTCTCAAGCCGTGGTCGCTTGTATGAGTACGCCAATAACAGTGTTAGAGCAACCATTGAGAGGTACAAGAAAGCATGCGCTGCTTCCTCAAACACAGAATCTGTAGCTGAAGCTAACACCCAGTTTTATCAGCAAGAATCATCCAAGTTAAGGAGGCAGATACACGACATTCAGAATCTAAACAGGCACATTCTGGGTGAAGCTCTGAGTTCCTTGAGTCTGAAGGAGCTTAAAAACCTAGAGGGCAGACTAGAGAAAGGCTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGAAGTGGAGTTTATGCAAAAGCGGGAAATGGAACTTCAAAACCATAACAACTATCTACGAGCAAAGATAGCAGAACAGGAGAGAGAAGCCCAGCAGCAGCAGCAGCAATCAAGTGTGATGCAGCAACAGGGAAGTGTGTGTGAGTCCATGCCTTCACAATCATCTTATGATCGCAACTTCTTCCCTGTAAATCTCTTGCCATCTAATAATCCTCACTATTCTTCTCGTCAAGATCACACTGCCCTCCAGCTTGTGTAA 792 0.4318 MEAPNELQVVAEEGGGGSCSSHHHHNQQKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQEREAQQQQQQSSVMQQQGSVCESMPSQSSYDRNFFPVNLLPSNNPHYSSRQDHTALQLV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1793 263 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 CDD MADS_MEF2_like 32 108 IPR033896 GO:0000977|GO:0045944
Mibi05g1793 263 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 FunFam agamous-like MADS-box protein AGL11 43 126 - -
Mibi05g1793 263 MobiDBLite consensus disorder prediction 12 35 - -
Mibi05g1793 263 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 ProSiteProfiles K-box domain profile. 117 207 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g1793 263 MobiDBLite consensus disorder prediction 206 231 - -
Mibi05g1793 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 213 - -
Mibi05g1793 263 MobiDBLite consensus disorder prediction 204 231 - -
Mibi05g1793 263 Pfam K-box region 115 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g1793 263 SUPERFAMILY SRF-like 32 106 IPR036879 GO:0003677|GO:0046983
Mibi05g1793 263 Gene3D - 43 112 IPR036879 GO:0003677|GO:0046983
Mibi05g1793 263 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Mibi05g1793 263 Coils Coil 187 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1793 Mibi-ChrMibi05 21769449 21775013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1793 12 263 MADS-box Gene Family AT3G58780 69.531 6.64e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi05g1793 K-box 1.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1793 05 21769449 21775013 Mibi05g1793 05 21769449 21775013 ECH