Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1791 ATGAACAAATATGAGGTTAAGGAAATAGTTATGAAGGACCTCCTCACCAACCGTCAAACAGTGTTAGTTCTTGAAGGGGCTCGTTGTTCTTGCATGGCTGATGCTGGTGACCCCCCGAAATCTGTTGAAAATCAACAATCCGAGCAAGCCGCAAGTTGTGTGAAGCCTGATAATAAGTTGTACTTTTCCACTGGTTCATCAAAAAGCACTGAATCTAAAGTACAAGAGGAACCTGAAAAGAAATTGTTCCATTTCGAGTCTTCGAAAGAGATTCAAGTTCAACATGATAACAAAGCAACTGCCATCCTTGAGACTGAAACTGAGTTTTCTAATGATGCTCGAGCTATTCGTGAGAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAAGTGCTAGTTCTGGAGAAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGTCGAGAGCAGACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCATCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGATATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAATTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCCAGGAGAATGAGATTGGCTGCAGGGGAGGATACGGATGAGGAGGGTGCTAATTTGAGTGATGAAGATGATGATGATTCCTTACCATTTGCGTGCTTCATTTGTAGGAAGCCCTTTGTAGATCCTGTTGTAACAAACTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGGTAAATAA 969 0.4252 MNKYEVKEIVMKDLLTNRQTVLVLEGARCSCMADAGDPPKSVENQQSEQAASCVKPDNKLYFSTGSSKSTESKVQEEPEKKLFHFESSKEIQVQHDNKATAILETETEFSNDARAIRERALKQAEESLKGKSASSGEEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDTDEEGANLSDEDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEGK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1791 322 PANTHER ZINC FINGER PROTEIN 183 49 320 IPR039971 -
Mibi05g1791 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 319 IPR013083 -
Mibi05g1791 322 SMART ring_2 262 299 IPR001841 -
Mibi05g1791 322 CDD RING-HC_RNF113A_B 260 300 - -
Mibi05g1791 322 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Mibi05g1791 322 SUPERFAMILY RING/U-box 261 304 - -
Mibi05g1791 322 Gene3D - 183 217 - -
Mibi05g1791 322 Pfam Zinc finger, C3HC4 type (RING finger) 261 303 - -
Mibi05g1791 322 FunFam Zinc finger CCCH domain-containing protein 1 183 217 - -
Mibi05g1791 322 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872
Mibi05g1791 322 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Mibi05g1791 322 FunFam RING finger protein 113A 260 319 - -
Mibi05g1791 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Mibi05g1791 322 ProSiteProfiles Zinc finger RING-type profile. 262 300 IPR001841 -
Mibi05g1791 322 ProSitePatterns Zinc finger RING-type signature. 277 286 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1791 Mibi-ChrMibi05 21731273 21734921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1791 54 320 C2H2 Transcription Factor Family AT1G01350 72.285 1.28e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi05g1791 zf-C3HC4_3 1.7e-08 CL0229