Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1788 ATGTTTAAACGAAAGATCTTAACATTTGGCCTTGCCTTTCTCATTCAGAATCTGCTCATCAATCACACTTCTAGGATGGAGGTTGTTTTGGCAGCATCTTCTGCTGATGCTGATGTTGGCTGCTGGGACCTTAAGTCAGGGGCTGAGCAGCTGCGCTATAAAACTTGTGCTTCCACACCTCATGGCCTCATTAGTGTGGGCAGTCGCTTCCTTGCATCTTCCCAGATCCGAGATTCCAAAGCTAATGCTGGTCTGGTTCTCTACTGGTCCTGGTCCAAGCCTCAAGTAGAAGTCAAGAGCTTTCCAGCTGAGCCAATCGGGCCTCTTGCTGCTAATCATCCGGGGACTTATATAGCTGGTGGTGGTTTATCGGGTCACATATACTTTTGGGAGGTTGAAACTGGCAGATTGCTCAAGAAATGGCATGCTCATATTGGGGCTGTAACTTGCCTAGTATTTTCTGAGGATGACTCACTACTGATATCTGCTTCAAAAGATGGATGCATACGAGTTTGGTCCTTGTTCATGATATTTGATGATTGGAAAAGGCAGGAAGCAGGTCATAGTTATGAGCATAGTTTTTCAGGGCACACTTTACCAGTAACTGACATTGTAATTGGTAATGGATGCTGCAATGCAATTATAATTTCTGCTGCGGGGGATACGACCTGTAAGGTTTGGAGCTTATCTAGAGGAACACTACTAAGAAATATAGTATTCCCTTCAAAAATTGATGCAATTGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGCAGTAGCAATGGAAAAATATTTATTGCGGCTCTTAATACTGAAAGGATCTCTAGTCATAATCATGAGATGCATATCATCGGTTCATTCTCTAATCACAGCAAAGCAGTTACTTGCTTAACATATAGTGCCAGTGAGAATTTGTTGATCTCTGGATCAGAAGATGGAATGGTTCGGCTTTGGAATGCAAAAACTCAAAATTTTGTACGCATGTTCAAGCATGCAAAAGGGCCAGTAAATAATATCCTGGTTGCTAAGCGGCATGACTCGAGTAAGCCTTTACAATCACACTCAAGAAAGCAGGGATCTTCATTACCCCCTCCGTTGGAAAAATATTCAAATTCAACAATAGATGAAGATTCAGATGTTAAGACTATTGTTAGCCTCCACGATGGAAGGAGTTGTGTGGATGTTTCATACATGTCTTCTCAGGCAATATTTAATCAAATCAAGGATTTTCAGAATCAGGGCTCCTCTGCTTCAGAAATGGAGCTGGAGAGACTAAAAGCAGATTGCAAGAGGTCTGTCCAGATGGTTGACCGATTTAAGAAAATGTATGAAGGTTTGCAAGAGTTCTATGAAGATGACTTCTTGAAAAGTGGTCAAACATAA 1386 0.4177 MFKRKILTFGLAFLIQNLLINHTSRMEVVLAASSADADVGCWDLKSGAEQLRYKTCASTPHGLISVGSRFLASSQIRDSKANAGLVLYWSWSKPQVEVKSFPAEPIGPLAANHPGTYIAGGGLSGHIYFWEVETGRLLKKWHAHIGAVTCLVFSEDDSLLISASKDGCIRVWSLFMIFDDWKRQEAGHSYEHSFSGHTLPVTDIVIGNGCCNAIIISAAGDTTCKVWSLSRGTLLRNIVFPSKIDAIALDPAEHVFYAGSSNGKIFIAALNTERISSHNHEMHIIGSFSNHSKAVTCLTYSASENLLISGSEDGMVRLWNAKTQNFVRMFKHAKGPVNNILVAKRHDSSKPLQSHSRKQGSSLPPPLEKYSNSTIDEDSDVKTIVSLHDGRSCVDVSYMSSQAIFNQIKDFQNQGSSASEMELERLKADCKRSVQMVDRFKKMYEGLQEFYEDDFLKSGQT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1788 461 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Mibi05g1788 461 PRINTS G protein beta WD-40 repeat signature 215 229 IPR020472 -
Mibi05g1788 461 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
Mibi05g1788 461 MobiDBLite consensus disorder prediction 347 374 - -
Mibi05g1788 461 ProSitePatterns Trp-Asp (WD) repeats signature. 307 321 IPR019775 -
Mibi05g1788 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Mibi05g1788 461 Gene3D - 240 349 IPR015943 GO:0005515
Mibi05g1788 461 FunFam Protein ROOT INITIATION DEFECTIVE 3 23 267 - -
Mibi05g1788 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 174 - -
Mibi05g1788 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 237 IPR001680 GO:0005515
Mibi05g1788 461 MobiDBLite consensus disorder prediction 354 369 - -
Mibi05g1788 461 Gene3D - 14 239 IPR015943 GO:0005515
Mibi05g1788 461 Pfam WD domain, G-beta repeat 285 320 IPR001680 GO:0005515
Mibi05g1788 461 Pfam WD domain, G-beta repeat 136 173 IPR001680 GO:0005515
Mibi05g1788 461 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Mibi05g1788 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 323 - -
Mibi05g1788 461 SMART WD40_4 94 131 IPR001680 GO:0005515
Mibi05g1788 461 SMART WD40_4 231 269 IPR001680 GO:0005515
Mibi05g1788 461 SMART WD40_4 187 228 IPR001680 GO:0005515
Mibi05g1788 461 SMART WD40_4 281 320 IPR001680 GO:0005515
Mibi05g1788 461 SMART WD40_4 134 173 IPR001680 GO:0005515
Mibi05g1788 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 174 IPR001680 GO:0005515
Mibi05g1788 461 SUPERFAMILY WD40 repeat-like 29 342 IPR036322 GO:0005515
Mibi05g1788 461 PANTHER WD-REPEAT PROTEIN 18 26 454 IPR045227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1788 Mibi-ChrMibi05 21690492 21697770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1788 113 330 U-box Gene Family AT1G04510 22.523 6.58e-11 62.4