Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1759 ATGGCTCCTTCTTTTGTATTCGAACCTCCCAGCGACGAAGAAGCAATCGAGTGCTCTGATTCCGAAGACGAAGAGCACGAACAAAGCCAAGAAGACGAAGCTGAAGAGCACAGTGACCATGATAATAACGACGACGAAGAAGAAGAACAAGAGGAAGTTGTAGACGAAGAAAGAGCACGGATTACGAATAAGAAATCTCAATCCCCATGGGATTTCGCTAAGTACACTGAATCTGTCTCAGAGGAACATGCCCGACGAAGCACTACTTCTGTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGCTCTGCTCCGTTTAGAAAGCCCGTTGAAGATGAAGACCAGGAGAGCTCAGAATCTGAATCTGACAAACAAGAGGATTATAGACCAGAAGAGGAAGAAGAAGAAGGTGGTAATGAAGAGAGCAAGTCTTTCTTTGCGCCATCTGAAGGAACTTCATTCCATGCTGACTCATTTATGGAGCTTAATTTGTCGCGTCCTTTGCTCCGTGCTTGTGAGGCCTTAGGTTATGTTAAACCTACACCAATTCAGGCAGCGTGTATACCACTTGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGTTCTGGGAAGACAGCTGCATTCTCACTGCCTACTCTGGAGAGGCTTTTGTACCGTCCGAAACGTGTGCAAGCCATAAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGTATGGTAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTCGTTGGGGGTTTGTCTACAAAGGTGCAAGAGGCGGCCTTGAGATCTATGCCAGATATTGTTGTTGCTACCCCAGGGCGTATGATAGATCATTTACGAAATTCCATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTCTTAGAGCTTGGTTTTAATGCTGAAATTCATGAACTTGTTCGCTTGTGTCCCAAGAAAAGGCAGACAATGCTATTTTCAGCTACCATGACTGAGGAGGTCGATGAACTTATTAAACTTTCTCTAACAAAACCCTTGCGTCTTTCTGCCGATCCATCTGCAAAACGGCCAGCAACCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGTTCTAAAACGTTTACATCTAAAGTGATCATATTCAGTGGAACAAAACAAGCTGCGCACAGGTTGAAGATTATATTAGGATTAGCTGGCATGAATGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAATCTTTAGAGCAGTTTAGGAAGCAGCAAGTCGACTTTTTGGTTGCAACTGATGTTGCTGCTCGAGGCTTAGATATTATTGGTGTTCAAACAGTCATCAACTTTGCATGTCCGCGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTCACGTTTGTGACTGATAATGACCGGTCACTGTTAAAAGCAATTGCAAAGAGGGTGGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAACAATCTGTAATTAAGTGGTCTCAAACAATTGAGCAAATGGAGGATGAAATTGCGGCAATTCTTGAAGAAGAGAGGGAGGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCAACAAAGGCTGAAAACATGATTGAGCATAGGGAAGAGATATATTCCCGGCCCAAAAGAACTTGGTTTATGACAGAGAAGGAGAAGAAGCTTGCTGCAAAGGCGGCCAAGACGTCTAATAAGAAGGAAAAGAGCTCCAGGAAGGAGGTAATCAGTGCTGAACAAGCTGAAGCCCTAAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAAAAAAATTTGCCTAGGAAGAAGCGCAGAAAATTGGAAGCTGCTAGAGAGATGTTGGAGGATGAAGGTCATTTTGAGAAGCCAAATGCTAATGAGAAAAACAAGAAAGAGAAGACTGGAATGTCACTTGTTGATGTGGCATACCGACGAGCGAAAGCAGCTAAAGCTGTGAAGAAGGCTCTAGATGCTGGCAAAATTGTGAAGAAGGGGAAGAATAAATCGAATAATTCTTCTCGAAAGACTCCTTCGAGGACAGAGGAAATGCAGGAGCTTTTCCAAGCTGACATGAGTGAGAAAAAACAAAAGAGAGTTGGTGGACAAGGGAAGAAGCCCAAAAGTTCATTCAAAAGCAAGTCAAGGTATGCAGTACTACTCTTAATTGTTTCTCTTGATGAATCTAATAGATCGAGGGAGGGAAGGTCTCAAATTTGA 2343 0.437 MAPSFVFEPPSDEEAIECSDSEDEEHEQSQEDEAEEHSDHDNNDDEEEEQEEVVDEERARITNKKSQSPWDFAKYTESVSEEHARRSTTSVDQKIAKAIKERSAPFRKPVEDEDQESSESESDKQEDYRPEEEEEEGGNEESKSFFAPSEGTSFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKIILGLAGMNAAELHGNLTQAQRLESLEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRVGSKLKSRIVAEQSVIKWSQTIEQMEDEIAAILEEEREERVLRKAEMEATKAENMIEHREEIYSRPKRTWFMTEKEKKLAAKAAKTSNKKEKSSRKEVISAEQAEALRMKEKRKREREKNLPRKKRRKLEAAREMLEDEGHFEKPNANEKNKKEKTGMSLVDVAYRRAKAAKAVKKALDAGKIVKKGKNKSNNSSRKTPSRTEEMQELFQADMSEKKQKRVGGQGKKPKSSFKSKSRYAVLLLIVSLDESNRSREGRSQI 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1759 780 SMART ultradead3 176 377 IPR014001 -
Mibi05g1759 780 Gene3D - 373 559 IPR027417 -
Mibi05g1759 780 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Mibi05g1759 780 SMART helicmild6 416 497 IPR001650 -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 1 148 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 76 114 - -
Mibi05g1759 780 Pfam DEAD/DEAH box helicase 181 351 IPR011545 GO:0003676|GO:0005524
Mibi05g1759 780 Coils Coil 619 641 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 13 54 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 115 139 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 602 678 - -
Mibi05g1759 780 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 536 IPR001650 -
Mibi05g1759 780 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 362 IPR014001 -
Mibi05g1759 780 Coils Coil 535 582 - -
Mibi05g1759 780 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 308 316 IPR000629 -
Mibi05g1759 780 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 113 715 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 720 741 - -
Mibi05g1759 780 CDD DEADc_DDX27 168 363 - -
Mibi05g1759 780 Pfam Helicase conserved C-terminal domain 393 497 IPR001650 -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 643 678 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 602 636 - -
Mibi05g1759 780 MobiDBLite consensus disorder prediction 699 753 - -
Mibi05g1759 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 517 IPR027417 -
Mibi05g1759 780 CDD SF2_C_DEAD 374 506 - -
Mibi05g1759 780 Gene3D - 101 364 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1759 Mibi-ChrMibi05 21239530 21249581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1759 157 514 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 1.16e-51 184