Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1717 ATGGGTCTTTGTTTGAGTAAAAGCAAAGCTTCAGAGCGAGAATACAATGGGTACAGATCAGTTGGGGCAACAGGAGGAGGAGGAGCACAGAATTACAAAACCCATGAACCCCAAGTGAATCAATCAAAACCTAATTCTCATCAGCCCTATCAATTACCTGAGAAACCAAATTCTAGGGCTTTGATGAATCCCACTAAGCCTGGTGGTCATCAGAATACGATTCTGGGGAAGCAATTTGAAGATGTGAAGCAGTTTTATAAGATTGGGAAAGAATTGGGTAGGGGTCAATTTGGTGTGACATATCTTTGTACTGAGATTTCAACTGGTAGGCCGTACGCCTGCAAGTCAATCTCCAAGAGGAAGCTCACAAGTAGAGCTGATAAGGAGGATATGAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAGCCTAATATTGTGGAGTTTAAAGGTGCTTATGAGGATAGTCATTCTGTTCATCTTGTGATGGAGTTATGTGCAGGTGGTGAGCTTTTTGATCGGATTATTGCTAAGGGACATTATAGTGAAAGAGCTGCTGCTTCTATATGTAGACAGATTGTTAATGTTGTTCATATCTGTCACTTCATGGGTGTGATGCATAGAGATCTCAAGCCTGAGAATTTCTTGTTGTCTAGTAAGGATGAAAAGGCTCTTCTCAAAGCCACAGATTTCGGTTTGTCCGTTTTCATTGAGGAAGGAAAGGTTTATCGGGATATAGTCGGGAGTGCTTATTATGTCGCTCCTGAAGTCCTACGGCGCAGATATGGGAAGGAAATCGACGTTTGGAGTGCAGGAGTGATATTGTATATCTTACTCAGTGGTGTACCTCCTTTTTGGGCTGAGACTGAAAAAGGAATATTTGATGCCATTTTGGAAGGTCATATTGATTTTGATAGTCAACCATGGCCAAGCATATCAGTCAGTGCCAAGGATCTTGTACGTAAGATGCTGACACAAGACCCAAAAAAGCGCATCACCTCTGCTCAGGTTCTTGAGCACCCATGGATTAGAGAAGGTGGAAATGCATCTGACAAGCCGATCGATAGCGCGGTCCTCTCCAGAATGAAGCAATTCAGAGCAATGAATAAGCTAAAGAAACTTGCCCTGAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGGTTGAAGGCAATGTTTACAAATATTGACACAGACAACAGCGGTACAATCACCTATGAGGAACTAAAAGAAGGATTGCAGAGACTTGGATCAAAGCTCACAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGTACCATCGACTACATAGAGTTTATCACTGCCACAATGCATAGACATAGATTAGAAAGAGATGAGCATCTCTACAAAGCATTCCAGTATTTTGATAAAGATCACAGTGGGTTCATAACAATAGATGAACTTGAAACGGCCATGAAAGAATATGGCATGGGGGACGAAGGCACAATCAAGGAAATTATATCAGAAGTTGACACAGATAATGATGGAAGAATCAATTATGATGAATTCTGTGCAATGATGAGGAGTGGAAACCCGCAAGGCAAGTTATTGTGA 1602 0.4195 MGLCLSKSKASEREYNGYRSVGATGGGGAQNYKTHEPQVNQSKPNSHQPYQLPEKPNSRALMNPTKPGGHQNTILGKQFEDVKQFYKIGKELGRGQFGVTYLCTEISTGRPYACKSISKRKLTSRADKEDMKREIQIMQHLSGQPNIVEFKGAYEDSHSVHLVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDEKALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDVWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFDSQPWPSISVSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELKEGLQRLGSKLTEAEVKQLMEAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDHSGFITIDELETAMKEYGMGDEGTIKEIISEVDTDNDGRINYDEFCAMMRSGNPQGKLL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1717 533 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Mibi05g1717 533 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Mibi05g1717 533 Coils Coil 409 429 - -
Mibi05g1717 533 SUPERFAMILY Protein kinase-like (PK-like) 85 351 IPR011009 -
Mibi05g1717 533 SMART serkin_6 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1717 533 MobiDBLite consensus disorder prediction 1 73 - -
Mibi05g1717 533 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Mibi05g1717 533 ProSiteProfiles EF-hand calcium-binding domain profile. 499 529 IPR002048 GO:0005509
Mibi05g1717 533 SMART efh_1 427 455 IPR002048 GO:0005509
Mibi05g1717 533 SMART efh_1 498 526 IPR002048 GO:0005509
Mibi05g1717 533 SMART efh_1 463 491 IPR002048 GO:0005509
Mibi05g1717 533 SMART efh_1 391 419 IPR002048 GO:0005509
Mibi05g1717 533 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Mibi05g1717 533 Pfam Protein kinase domain 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1717 533 Gene3D Phosphorylase Kinase; domain 1 88 171 - -
Mibi05g1717 533 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1717 533 Gene3D Transferase(Phosphotransferase) domain 1 172 351 - -
Mibi05g1717 533 FunFam calcium-dependent protein kinase 1 172 351 - -
Mibi05g1717 533 FunFam Calcium-dependent protein kinase 1 88 171 - -
Mibi05g1717 533 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Mibi05g1717 533 Pfam EF-hand domain pair 392 452 IPR002048 GO:0005509
Mibi05g1717 533 Pfam EF-hand domain pair 462 524 IPR002048 GO:0005509
Mibi05g1717 533 CDD EFh 466 524 IPR002048 GO:0005509
Mibi05g1717 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 519 - -
Mibi05g1717 533 MobiDBLite consensus disorder prediction 31 53 - -
Mibi05g1717 533 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Mibi05g1717 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Mibi05g1717 533 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Mibi05g1717 533 SUPERFAMILY EF-hand 383 523 IPR011992 -
Mibi05g1717 533 FunFam Calcium-dependent protein kinase 1 352 527 - -
Mibi05g1717 533 CDD STKc_CAMK 85 343 - -
Mibi05g1717 533 Gene3D - 352 526 - -
Mibi05g1717 533 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1717 Mibi-ChrMibi05 20688425 20692550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1717 1 529 EF-hand Containing Proteins AT3G20410 76.427 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mibi05g1717 Pkinase 1e-74 CL0016