Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1684 ATGGTAAAGAAAATTCAAAGAACTCGGTGTGTATGCCTTCCTGTCCCTCTTTCCCCTTCCAACCATTTCCTTCCTCCTTCTTCCCCTCTCCTTTTTATCCTTCCTAATCCTCCCCTCACAAATCTTCATCCTCCCAACAATCTCCCTCTCATTTCTCCCTCATATCCCACACTTTCAAATGCCCACCTCCTCCCATTAAATCAAACCATATCCTATCAGATTGCCGCCTTTCTTGACACCCAATTCTTGATTTGTTTTTCCCAACCCTCCACAGCCTTTTTTTTTTCTTGGGGAGGATTCTTGAAGAAGAAGAAGAAGAAGAACATGAGGAGAATCAGAGGAACCGCCGCCGCCGCCGCCGTTAAACAAGCAGCGGTGGAATTCAACGGAACCGGTCCAAAGGAGCCAAGATTCCGTGGCGTAAGGAAAAGACCATGGGGAAGATTCGCCGCAGAGATCAGAGATCCATTGAAGAAATCTCGTGTCTGGTTAGGCACCTTCGATTCCGCCGAGGAAGCCGCTAAAGCCTACGATGCAGCCGCCATAGCCCTCCGTGGTCCCAAGGCCAAAACCAATTTCCCTATCCCCTCTTCCTTCTCCCCCTTCTGTTACCCAACCACAAACCCTAATACCGACGACGACGACGGAAACCGTAACAACGTTTTGGATCGCAGGTTGTATGTGAATCATCATAATAATAATAATAATAATGGCTTTCATGAGGATCAGATTATTCAGCCTCAGAGACCTGCGACGAGTAGTATGAGCAGTACTTCATTCAGTGGGCCACGGCCGGCGCCGCCGCCGCGTGCGGCGGCGCCGGCGGGGAGGTACCCTCGGACGCCGCCGGTCATGCTTGAGGATTGTCGGAGTGATTGTGATTCGTCGTCTTCTGTGATTGATGGTGATGGAGATTGCGAGGTTGTTGATTTTGCGTCGTCTTCGTGTTTTCGTCAACCTTTGCCTTTTGATCTTAATTTTCCACCGTTGGATGATGATGCTGGTGATGATCTTCACTGCACTGATCTCTGCCTCTGA 1038 0.4971 MVKKIQRTRCVCLPVPLSPSNHFLPPSSPLLFILPNPPLTNLHPPNNLPLISPSYPTLSNAHLLPLNQTISYQIAAFLDTQFLICFSQPSTAFFFSWGGFLKKKKKKNMRRIRGTAAAAAVKQAAVEFNGTGPKEPRFRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAEEAAKAYDAAAIALRGPKAKTNFPIPSSFSPFCYPTTNPNTDDDDGNRNNVLDRRLYVNHHNNNNNNGFHEDQIIQPQRPATSSMSSTSFSGPRPAPPPRAAAPAGRYPRTPPVMLEDCRSDCDSSSSVIDGDGDCEVVDFASSSCFRQPLPFDLNFPPLDDDAGDDLHCTDLCL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1684 345 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
Mibi05g1684 345 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 108 301 - -
Mibi05g1684 345 MobiDBLite consensus disorder prediction 247 283 - -
Mibi05g1684 345 Gene3D AP2/ERF domain 137 195 IPR036955 GO:0003700|GO:0006355
Mibi05g1684 345 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Mibi05g1684 345 MobiDBLite consensus disorder prediction 247 261 - -
Mibi05g1684 345 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Mibi05g1684 345 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Mibi05g1684 345 MobiDBLite consensus disorder prediction 262 276 - -
Mibi05g1684 345 FunFam Ethylene-responsive transcription factor 2 137 195 - -
Mibi05g1684 345 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Mibi05g1684 345 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Mibi05g1684 345 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1684 Mibi-ChrMibi05 20334586 20336549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1684 109 345 AP2-EREBP Transcription Factor Family AT1G50640 54.733 2.27e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi05g1684 AP2 8.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1684 05 20334586 20336549 Mibi05g1684 05 20334586 20336549 ECH