LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g1656	ATGGAATCGGTGATGGTTGGTGAGGGAGTGGAGCCGCCGGAGGCCGCGCGATCCGAGGGCTTGCCGGTGAAAAGGCCGGTTGAGAATGGTGGTGGGAGCGAGGAATTGGCCAAGAAAGCTAAGATTGAAGCTGATGTTGTTGCTGCTGCTGCTACATCTACTGGGGAGTTGAAGAGAGTGGCGGAGATTGTGATGGTTTTATCGACGATGACAGCAATGCGAGGTGGGAAGAAGCCCACTGATGTGGAGATTCAGTTGATGAAGGAGGCGAGGATGAAGTTGGTAGACTTGTGTCAAGAATTGGCCCCTAAGGATATTATAGCTAGGGAAGCTGTGGGCACTGTCATTGAGGATCTTGGATTGAATGGCAGGTTTAAAGATCACAGATTAGGGTTTCAATCCCCAAAGATGTCTATCGCCGAAAGGTTTAAGCTCTCCAAGTTGAAGATGGAGGAATCAAGGAAACATCCTGAACATTCTGTTCCATCAACTTCTCCGCCAATGCTAGTAAGCATGGGTGGTGGAATGATTGAAAACCGTACGCCATCTCATACTGCTCGAATGTATGCCATGGACAAATCAAGCCACACGGGATTCTCTTCTCCTGGCACCATGGTTTCTCCTCCCGTGAATCATGTTTCTGCTGGATCTTCTGCTGCTTTGCAATATCAATCAACTGCTGGTGAAGTAAAACCACCTGTGGTTTCTGGTGGAATGCATAGCAGTCACTTGGGTAGAATGTCATCTTCAGCAGCATTGCCTAAAGTTGATCAACCACAGTTCAGAGTTGATGGAGGATCTAGTGGGCCTTATTTGCTGCATGCTCAAGCGAACTCTTCATCAAACCAACCATTGGTGAATGCTCCGACATGGTCAATACAAACTCAAACTCAATCTGCCTCATTAGCTAGAAGTACGCAGGAAAACAAAGTGACTGGACATAACCCCGTGAAGGTTGATGGAATGGGTGACCTAACTGGGCCCAGAGCTGCTTCACAAATAGCAAGGGATCAGAGCTATAGGCCCTTAGTAACTCAAACAGTGCCTGGAAATTTGTCAAGCTTGCAGCAGCCATTACAGGGCACAAACATTATTCAGCCCTCTTCAGTTCCTAATAATCACACTGAAATTGCAAAGGTTGTCCAGAAACTTTTACAACCAAAGCTTCCTGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCATTTACTTGCCAGATGTGTGATCTCCCTGCCAATGAAGTGGACACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCGTCACTTTTGAGAGGAATCCCTAGAGGTGAGTGGCATTGCATGAGATGCTTGACATTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCTGCAAATACTCCACCTAAATTGCCCTCAAGCACTGGTGGAGTCCAACCATCCTTAGAGAAGAAAACTGGAGTTGCAGCTCTGAAGGTCAGCTCACAAGAGTTACCAACAAGTGGTGGCTCTGCTTCAACTGATGCCACCGGTAACAATAAGAATGCTGAGCTTCCATCTGTCTCAAAGATCCCTGACACAAAAGAAATGCAAGATAACACTCAATCATCTATCATCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTCAGTGCATCTTCTGGTCCTTCTGTTGGCTTGCCAAGTGGAAGTTCTGCTGAACAAATAATTTCTGAGCCATCTACCTCCAAAGAGAGAACCTTTGCTTCAGAATCAGCAGTGCTTCCTCAATCAACTGAGTCAGTTAAACCCAGCAATTCGCAATTGTCAGAAAATGTAGAAGTTGAACTGGCACCATTATCAAACAGTGTTGACAATAGTTTGGCAGATAGTAACAGGAAGGAATCTCATGGGGGAGAAAGTATGACGTATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATGCTGAAGGTAGACAATGCACCGCATTATATTCAGACGACTTACATGCAGTAGAATGGGTTGGTGAGCTTGTACAACTGGTAGATGAGAAAAAGTTTTACCAATCTTGCCGAGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAATCTAGTCATGGCAAGTTAATTCCGTCTAAACTGCAGTCTATGTTTGAAGATAGCAAAACTGGGATGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAACATCCCTCATCCATGTATATCCGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCGCCATTCAAGGTCCTTGTGAAGTCCTCCCGTCTTTTAAATTTCAACAAGAAAACAATAAACGAAGAGAGTTAGAACCTGAGGAAAGTGCTAGACTTGGGCCTATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAACTATTTCAGCCTGTTACCAGTTGA	2529	0.4448	MESVMVGEGVEPPEAARSEGLPVKRPVENGGGSEELAKKAKIEADVVAAAATSTGELKRVAEIVMVLSTMTAMRGGKKPTDVEIQLMKEARMKLVDLCQELAPKDIIAREAVGTVIEDLGLNGRFKDHRLGFQSPKMSIAERFKLSKLKMEESRKHPEHSVPSTSPPMLVSMGGGMIENRTPSHTARMYAMDKSSHTGFSSPGTMVSPPVNHVSAGSSAALQYQSTAGEVKPPVVSGGMHSSHLGRMSSSAALPKVDQPQFRVDGGSSGPYLLHAQANSSSNQPLVNAPTWSIQTQTQSASLARSTQENKVTGHNPVKVDGMGDLTGPRAASQIARDQSYRPLVTQTVPGNLSSLQQPLQGTNIIQPSSVPNNHTEIAKVVQKLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLPANEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSANTPPKLPSSTGGVQPSLEKKTGVAALKVSSQELPTSGGSASTDATGNNKNAELPSVSKIPDTKEMQDNTQSSIIKHMDEKPDPNISIKSLSASSGPSVGLPSGSSAEQIISEPSTSKERTFASESAVLPQSTESVKPSNSQLSENVEVELAPLSNSVDNSLADSNRKESHGGESMTYDIKRDDQYVALANSDKSSGTHAEGRQCTALYSDDLHAVEWVGELVQLVDEKKFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDSKTGMKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGAIQGPCEVLPSFKFQQENNKRRELEPEESARLGPIFLCRWFYDGVKKLFQPVTS	842

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	297	313	-	-
	Mibi05g1656	842	Pfam	PHD-finger	409	456	IPR019787	-
	Mibi05g1656	842	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	16	841	-	-
	Mibi05g1656	842	SUPERFAMILY	FYVE/PHD zinc finger	399	463	IPR011011	-
	Mibi05g1656	842	CDD	BAH	713	841	-	-
	Mibi05g1656	842	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	362	462	IPR013083	-
	Mibi05g1656	842	SMART	PHD_3	408	456	IPR001965	-
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	472	492	-	-
	Mibi05g1656	842	ProSiteProfiles	BAH domain profile.	714	841	IPR001025	GO:0003682
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	297	324	-	-
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	477	491	-	-
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	504	547	-	-
	Mibi05g1656	842	Gene3D	-	693	842	IPR043151	-
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	561	637	-	-
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	504	651	-	-
	Mibi05g1656	842	ProSiteProfiles	Zinc finger PHD-type profile.	406	458	IPR019787	-
	Mibi05g1656	842	MobiDBLite	consensus disorder prediction	1	36	-	-
	Mibi05g1656	842	ProSitePatterns	Zinc finger PHD-type signature.	409	455	IPR019786	-
	Mibi05g1656	842	CDD	PHD_SF	408	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g1656	Mibi-ChrMibi05	19912192	19916301	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g1656	390	500	C2H2 Transcription Factor Family	AT3G01460	29.915	2.30e-06	49.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mibi05g1656		PHD	8e-09	CL0390