Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1635 ATGGAATCAGATCTTGGCAAGCTTTTCATTGGGGGGATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAATTATGGAGAGGTGATAGAGGCCGTAATCATGAGGGATCGCGCGACAGGTCGTGCTCGTGGTTTTGGTTTCGTAGTGTTTGCTGATCCTGTTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAATAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTTCCTTCAAGCATAACTGAAAGTGAATTTAAGAAGTACTTTGATCAGTTTGGTACGATCAATGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAGACATTCCATGAACTCAATGGAAAGACGGTGGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCTCCAGGATCCAGCCGGAGCCCGTTGTTAGGAACAAATTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTATGGGCAGAGTTTTAACATGAGTCCAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACCAGTGGTAGAAGTGGAATTTCCCCCTTTGGCGCCAGCGGTTTTGGAGTGGGACTGAATCTTGATGCAGGGCTGAGTGCAGGATATGGTGGGACTTCCAATTATGGAAGCAATCTCGGATATGGCCGGATGATTAGTCCTTTTTACGGTGGCAATTCAAACAGATACACCACTCCCATAGGCTACAATGCTGGTAATGGGAGAAGTGATTCTCTAATGAACTCATCTTCTAGAAATGTCTGGGGAAGTGGTGGCCTTACTAATGCCAATAACCAAGTCAGTTCTGCTGCTGGCTTGGGATCTGGAAGTGGTGCTTTCGGCGTTTCAGTTAAAAATAGTGGTGCAAATTGGGGTCAGTCCTTTCCAACACAAGGTGGAGTGACTGCATCTGGGTATACCTCTGGGATTAATGTCTATGAAGGTGGAGACAGTAGTTTTGGGTTAGGAGGTACAGGTTATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCTTCATTTTCTGCATCAGCTGGTGGTTATGAAGGATCCTTTGGGGATTTATACCACAATAGTTCAGTTTACAGTGACTCAGCTTGGCGATCTTCTGCTACTGATCCAGATGATGGTTCATTTGGTTATGGACTTGGTGGTATAGCCTCAGAGGACCCAGAAAAGGCTTCAGAGGGTTATATAGGAAGCTACAATGCTTCAAGCCGACAACCTAATAGAGGAATTGCTGCCTAG 1428 0.4482 MESDLGKLFIGGISWDTDEERLKEYFGNYGEVIEAVIMRDRATGRARGFGFVVFADPVVAERVIMDKHIIDGRTVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKTVEVKRAVPKELSPGSSRSPLLGTNFGFNRASSYLNSYGQSFNMSPVGGYGVRMDGRFSPLTSGRSGISPFGASGFGVGLNLDAGLSAGYGGTSNYGSNLGYGRMISPFYGGNSNRYTTPIGYNAGNGRSDSLMNSSSRNVWGSGGLTNANNQVSSAAGLGSGSGAFGVSVKNSGANWGQSFPTQGGVTASGYTSGINVYEGGDSSFGLGGTGYGRNGSVGVNSSSFSASAGGYEGSFGDLYHNSSVYSDSAWRSSATDPDDGSFGYGLGGIASEDPEKASEGYIGSYNASSRQPNRGIAA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1635 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Mibi05g1635 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Mibi05g1635 475 Gene3D - 6 88 IPR012677 -
Mibi05g1635 475 SUPERFAMILY RNA-binding domain, RBD 105 269 IPR035979 GO:0003676
Mibi05g1635 475 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Mibi05g1635 475 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Mibi05g1635 475 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 470 - -
Mibi05g1635 475 MobiDBLite consensus disorder prediction 438 475 - -
Mibi05g1635 475 Gene3D - 105 185 IPR012677 -
Mibi05g1635 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Mibi05g1635 475 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mibi05g1635 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mibi05g1635 475 MobiDBLite consensus disorder prediction 459 475 - -
Mibi05g1635 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mibi05g1635 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mibi05g1635 475 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Mibi05g1635 475 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1635 Mibi-ChrMibi05 19697523 19700273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1635 2 217 Eukaryotic Initiation Factors Gene Family AT2G36660 28.947 3.42e-15 76.3