LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g1632	ATGGACGCCGCCGCCATGAACTCCGGCGAGGGCAGTGAATTGCGAGGTGCACGCTACAAGCTCTTCTCTCCGGCCACTCTTCCCATCTCCAGGTCACCTTGCATCACCATTCCCCCTGGCCTCAGTCCCTCCTCCTTTCTCGATTCTCCAGTTCTTCTCTCCAATCTCAAGGTGGAGCCTTCACCAACTACTGGATCCCTTACTAAACCTATGTCTGTTCAAGAATCCGTTTCTTCTTCAACGTATCCTGTATCCACTGTACGCTCCTCCGAAACCAATACTGTTGATGACAGAGTATCTGGCTTCTTTGAGTTTAACTCAAACAATAGATCGAATATGGCTCCCACAGATTTCAGCAGCCATGTAAACAAACCATCCATGCAAGTACAGGGTTCAAGCCAGCCTCAGTCTTCTGCTTCATTGCCATTAGTAAAGTGTGAGATGACAATGCCGTCAAATGAATTAAGTTTATCATCACCTGTTCAAATGGTTTGTTCAGGGACTAGTGCTCCTTTTCAAGCCGATATGGATGGGTCTAACCCCAGAGGCAATGTTGCTAATGCGCTTCAAGCTTCACAAGGTGAAGTTACAGGCAGTAGTGTCTCAGTTGCTACTGAGAGAACATCAGATGATGGATATAATTGGCGGAAATATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTTGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGATCACATGATCATCCTAAACCCCAACCAAGTCGCCGATACTCTTCTGGTACTACCATGTCTATGCATGAGGAGAGATTTGAGAAGCTTTCATCTTCGCCTGGCCAAGATGTCAATGTGTATGGTCAAGTATCTAGCACCACTGAGCCCAACAGTAATCCAGAGCTGTCTATTGTAGCAGCAAATGGTGATGGTCGGGAGGGTGCAGGTTTAGCTTCCAATAGGATCAATGATGAGGTTGATGAGGACGATCCCTTCTCAAAGCGAAGGAAGGCGGAGAGTGGAAATGTTGACATCATCCCTATAGTTAAGCCTATTCGAGAACCGAGGGTTGTTGTGCAAACTTTAAGTGAAGTTGACATATTGGATGATGGGTATCGCTGGCGGAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCCAACCCTAGGAGTTACTACAAATGCACGAATGCTGGTTGCCCTGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCCAAAGCAGTAATAACCACATATGAGGGTAAGCACAATCATGATGTGCCTACTGCAAGGAGTAGTAGCCATGATACAGCGGGACCTGCAGCACCAGTTGGACAGACACGAATGAGATCAGAAGAAAGCGATACCATTAGCCTCGACCTTGGAATGGGCATCAGCTCGGCTGCTGAAAATAAGTTGAAGGGGCAAGGGCAAATGCTACTCTCTGGATTTGGGAATGGTCAAACTCATGCTCACAATTCCAATTTCAAGTTTGTTCATAATGCCCCAGCTCCTGCATACTTTGGTGTTTTAAATGGCTCAAATGCATTTGGTTCTTCTAGAGAACCCCCTTCTTTGAACCATACCACTTATCGATGCACGCAGCCGCAGGGCATAGGAAGAGTACTAACTGGTCCATGA	1683	0.4635	MDAAAMNSGEGSELRGARYKLFSPATLPISRSPCITIPPGLSPSSFLDSPVLLSNLKVEPSPTTGSLTKPMSVQESVSSSTYPVSTVRSSETNTVDDRVSGFFEFNSNNRSNMAPTDFSSHVNKPSMQVQGSSQPQSSASLPLVKCEMTMPSNELSLSSPVQMVCSGTSAPFQADMDGSNPRGNVANALQASQGEVTGSSVSVATERTSDDGYNWRKYGQKHVKGSEFPRCYYKCTHPNCEVKKLFERSHDGQITEIIYKGSHDHPKPQPSRRYSSGTTMSMHEERFEKLSSSPGQDVNVYGQVSSTTEPNSNPELSIVAANGDGREGAGLASNRINDEVDEDDPFSKRRKAESGNVDIIPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSSSHDTAGPAAPVGQTRMRSEESDTISLDLGMGISSAAENKLKGQGQMLLSGFGNGQTHAHNSNFKFVHNAPAPAYFGVLNGSNAFGSSREPPSLNHTTYRCTQPQGIGRVLTGP	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g1632	560	Pfam	WRKY DNA -binding domain	210	266	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	Pfam	WRKY DNA -binding domain	383	439	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	FunFam	WRKY transcription factor 33	369	435	-	-
	Mibi05g1632	560	SUPERFAMILY	WRKY DNA-binding domain	374	442	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	48	465	IPR044810	GO:0003700
	Mibi05g1632	560	SMART	WRKY_cls	209	267	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	SMART	WRKY_cls	382	441	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	ProSiteProfiles	WRKY domain profile.	204	268	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	ProSiteProfiles	WRKY domain profile.	377	442	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	MobiDBLite	consensus disorder prediction	438	467	-	-
	Mibi05g1632	560	MobiDBLite	consensus disorder prediction	260	280	-	-
	Mibi05g1632	560	SUPERFAMILY	WRKY DNA-binding domain	205	268	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	FunFam	WRKY transcription factor	198	269	-	-
	Mibi05g1632	560	Gene3D	WRKY domain	367	443	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g1632	560	Gene3D	WRKY domain	197	269	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g1632	Mibi-ChrMibi05	19646199	19650535	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g1632	22	560	WRKY Transcription Factor Family	AT4G26640	54.775	0.0	518

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mibi05g1632		WRKY	1.4e-25	CL0274