Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1603 ATGGCGGACTCCGATAACGATTCCGGCGGGCCACATAACGCAGGAGGAAATGCTCACGGAAGCGAATTATCACCACGAGAGCAAGACAGGTTCCTACCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCACTTCCAGCGAATGCGAAGATCTCGAAGGATGCGAAGGAGACCGTACAGGAGTGTGTATCGGAGTTCATAAGCTTCATCACAGGCGAGGCCTCAGACAAGTGTCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGGGCGATGACCACCTTAGGGTTTGAGGATTACGTGGAGCCGCTCAAGGTTTACTTGCAGAGGTTTAGGGAGATGGAGGGAGAGAAGAGCGTCGTGGCCGCGCGTGATAAGGACGGAGGTGGTGGCGCGTCGAACAGCGCGTTTGATGGTGGCGGCGGGATGTACGGTGGCGCCGGAGGTGGTGGTGGTGGTGGTGGGATGGGGATGATGATGCATCAGGGACACGTGTACGGCTCTGGTGGGTTTCATCCGATGGGTGTGAGTGGTGGTCCTATTATGGGTAAGAGTGGGCCCACTTATCCGGGTCATGGATCTAATACGGGTAGACCCAGATAG 612 0.5588 MADSDNDSGGPHNAGGNAHGSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVVAARDKDGGGGASNSAFDGGGGMYGGAGGGGGGGGMGMMMHQGHVYGSGGFHPMGVSGGPIMGKSGPTYPGHGSNTGRPR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1603 203 MobiDBLite consensus disorder prediction 1 29 - -
Mibi05g1603 203 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Mibi05g1603 203 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Mibi05g1603 203 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Mibi05g1603 203 Gene3D Histone, subunit A 19 139 IPR009072 GO:0046982
Mibi05g1603 203 MobiDBLite consensus disorder prediction 180 203 - -
Mibi05g1603 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mibi05g1603 203 MobiDBLite consensus disorder prediction 126 145 - -
Mibi05g1603 203 FunFam Nuclear transcription factor Y subunit B-3 20 141 - -
Mibi05g1603 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Mibi05g1603 203 SUPERFAMILY Histone-fold 28 144 IPR009072 GO:0046982
Mibi05g1603 203 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1603 Mibi-ChrMibi05 19323142 19323753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1603 1 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.154 9.15e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi05g1603 CBFD_NFYB_HMF 1.9e-27 CL0012