Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1553 ATGCCTGGAAGCTTAAGAAATCCATCACTTTCTCCCAAATTCTCCTCCTCCTTCACCTTACTCCTCTCAATACACTCTCTTATCTTCTCCTTCTCCTTCTTTTTCCCATGTTGCTACTCCATTAATGAACAAGGCCAAGCTCTCCTTGCATGGAAGAACAGTTTGAACAGTACAGGAGGAGGAGAGGCACTATTAACATCTTGGAGTGCTTCAGATTCCAGCCCTTGCAAATGGGTTGGTGTGGGCTGCAACTCCAGAGGGGAAGTGGAGGAGATAAGCTTGAAATCTGTGGACCTGCAAGGCTCATTGTTGCCTTCAAATTTTCAAGCTCTAAAGTCTTTGAAGGTTCTTGTCCTCTCATCAACCAACCTCACAGGTCCAATCCCAAGAGAAATTGGAGACTATGAGGAGCTTGTTTCTTTTGATCTCAGTGGGAATTCTCTTTCAGGTGAAATACCAGAAGATATTTGCAGGCTGAGTAAACTTAAGAGTTTGTCTCTTCATACAAACTTTCTTGAAGGCAACATTCCATCCTACATTGGGAATCTCTCTAGTCTTGTGAATTTGACGCTCTATGACAACCAACTCAGTGGTGAAATCCCAAAGAGTTTTGGTTCCTTAAGAAGACTTCAAGTTTTCAGAGCAGGTGGGAATAAAAACCTTAAAGGTGAGCTTCCATGGGAGATTGGGAATTGCACCAGCTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGCCTTCCTTCTTCAATAGGAATGCTCAAGAACATTCAAACCATAGCTATTTACACAACTCTCTTGTCAGGCTCAATTCCAAAGGAGATTGGGAATTGCAGTGAGCTGCAGAATTTGTACTTGTATCAGAACTCTATTTCTGGTCCAATCCCAAGTCAACTTGGGAATCTCAAAAAGCTTCAGAGTCTTCTGTTATGGCAGAACAGTCTAACAGGGACAATACCAGAAGAGCTTGGAAGCTGCACAGAGCTCAAAGTCATTGACTTTTCAGTAAACCTCCTCACTGGAAGCATACCAAAGAGCTTTGGGATGCTTTCAAATATTGAAGAAATTCAGTTAAGTGTTAATCAGTTGACAGGTATTATACCTCCTGAGATTACAAATTGCACTTCTCTGACTCAGTTGGAAGTTGATAATAATGCTCTTTCCGGAGAGATTCCTGCTCTTATAGGCAACTTGAAAAGTTTGAACCTGTTCTTTGCATGGCAGAACAAGCTCACTGGGAGAATCCCAGAAAGTCTTTCTCAGTGCCAAGATCTTGAGGCACTTGATCTGTCTTACAACAATCTGATTGGTTCAATACCAAAATCACTCTTTGAGTTGAAGAATCTCACTAAACTCTTGCTCATTTCCAATGAACTATCAGGCTTTGTTCCTCCTGATATAGGGAACTGCACAAGTCTCTTCAGATTAAGATTGAACAGGAACAGATTTTCTGGGTCAATTCCACCTGAGATAGGAAACTTGAAAAACCTCAACTTTATGGATTTGAGCAGCAACCACTTTGTGGGGCAGATTCCTCCAACACTATCTGGATGTGAGAATCTTCAGTTCATTGACCTTCATTCAAATTCTTTCACAGGTTCAATCCCAGAGGCTCTTCCCAGAAGTCTTAGACTGATAGATTTCTCAGATAATAGGCTCACTGGTCCACTGACTCGCACCAATATTGGTTCATTAAGTGAAGTAACCAAACTCAACCTGGGAAAGAACCAACTCAGTGGAAAAATCCCAGAAGAGATCTCATCTTGCTCAAAGCTTCAACTTCTAGACCTTGGAAGCAATGACTTCTCTGGAGAAATCCCAAAGCAATTGGGTCAAATCCCATCATTGGAAATCTCTTTAAACCTCAGCTTCAATCAATTCTCAGGCCAAATCCCATCTCAAATCTCTGGCCTCATCAATCTGGGAATCCTTGACATCTCCCACAACAACCTCTCAGGGAACCTAAACTCACTCTCCAACCTCCAAAACCTCGTCTCCTTAAACGTCTCCTTCAACTACTTCTCTGGTGAATTACCCAACACCCCATTTTTCAAAAAGCTCCCTTTAAGTGACCTCACCCCAAACCAAGGCCTCTTCATGTCCGGCGCTGGCAATTTAGTGGGCCCCACTAAACCCCATGCCAGATCAGCAGTTAAGTTCATCATGTCCATTCTCTTAAGCACAAGCGCAATCCTCATACTCCTCACAGTCTATGCCTTGTTACGTTCTCACATCCAAAACAGAGCCATCATGGAAGAAGGTAGCTCATTATGGGAGATGACTTTTTACCAGAAGCTGGAAATCTCCTCCATTGATGACGTCATCAAGAGCATGACGTCATCCAACGTCATCGGAACAGGAAGCTCCGGCGTGGTGTACAGAGTAACAATCCCAAATAGCGAACTAGCCGTTAAAAAGATGTGGTCTTTAGAAGAATCTGGGGCTTTTGAATCTGAGATTCGAACTTTGGGTTCGATTAGACATAAGAACATTGTGAGACTCTTAGGTTGGGGATGTAATAAGAACATTAAGCTTCTGTTCTATGATTATCTTCCCAATGGGAGTCTTAGTTCGATGATTCATGGTTCTGGCAAGGGAGGGGCAGAATGGGAGACAAGGTACGAGGTTGTGGTGGGTGTGGCTCACGCGCTTGATTATTTGCACCATGATTGTGTTCCTCCTATAATTCATGGAGATGTTAAGGCTATGAACGTGTTGCTGGATGATAGGTTTCAGGCTTGTCTTGCTGATTTTGGATTAGCCAGGATTGTTGATGATAAAGAGGATGGTAATCATGATCATCATCGTTCTGATACTAAACCACTTCATAAAACGTATTTGGCTGGTTCTTACGGATACATGGCTCCAGAACATGCATCAATGCAGAGAATAACAGAGAAGAGTGATGTGTATAGTTATGGAGTGGTCCTTTTGGAGGTATTAACAGGGAGGCACCCACTAGACCCAACTCTACCAGGTGGTGCACACATGGTTCAGTGGGTCCGTAACCACTTAGCCAATAAAGGAGACCCATCTGATATTCTGGACCCAAAGCTCAGAGGCAGGGCAGAGCCAGCCATGCATGAGATGCTTCAGACTTTGGCTGTCTCATTCCTATGTGTCAGCACTAAGCCTGAGGGTCGTCCTACCATGAAGGACATTGTGGCCATGCTCAGAGAAATAAGACCCATTGATGAGAACTCAAGGTTTTTGGATTCTGATGAACTCAAGAAGAAGGCCAAGTCTTGTTTGGATGCCTCCCCCTATCCTCTTCCTCCACCTAAGCATCTCGTTTCCCATCAATCTTCTAACGTTTCCTTTCATTTCTCAGATGACTCAGTCTAA 3351 0.4342 MPGSLRNPSLSPKFSSSFTLLLSIHSLIFSFSFFFPCCYSINEQGQALLAWKNSLNSTGGGEALLTSWSASDSSPCKWVGVGCNSRGEVEEISLKSVDLQGSLLPSNFQALKSLKVLVLSSTNLTGPIPREIGDYEELVSFDLSGNSLSGEIPEDICRLSKLKSLSLHTNFLEGNIPSYIGNLSSLVNLTLYDNQLSGEIPKSFGSLRRLQVFRAGGNKNLKGELPWEIGNCTSLVMLGLAETSISGSLPSSIGMLKNIQTIAIYTTLLSGSIPKEIGNCSELQNLYLYQNSISGPIPSQLGNLKKLQSLLLWQNSLTGTIPEELGSCTELKVIDFSVNLLTGSIPKSFGMLSNIEEIQLSVNQLTGIIPPEITNCTSLTQLEVDNNALSGEIPALIGNLKSLNLFFAWQNKLTGRIPESLSQCQDLEALDLSYNNLIGSIPKSLFELKNLTKLLLISNELSGFVPPDIGNCTSLFRLRLNRNRFSGSIPPEIGNLKNLNFMDLSSNHFVGQIPPTLSGCENLQFIDLHSNSFTGSIPEALPRSLRLIDFSDNRLTGPLTRTNIGSLSEVTKLNLGKNQLSGKIPEEISSCSKLQLLDLGSNDFSGEIPKQLGQIPSLEISLNLSFNQFSGQIPSQISGLINLGILDISHNNLSGNLNSLSNLQNLVSLNVSFNYFSGELPNTPFFKKLPLSDLTPNQGLFMSGAGNLVGPTKPHARSAVKFIMSILLSTSAILILLTVYALLRSHIQNRAIMEEGSSLWEMTFYQKLEISSIDDVIKSMTSSNVIGTGSSGVVYRVTIPNSELAVKKMWSLEESGAFESEIRTLGSIRHKNIVRLLGWGCNKNIKLLFYDYLPNGSLSSMIHGSGKGGAEWETRYEVVVGVAHALDYLHHDCVPPIIHGDVKAMNVLLDDRFQACLADFGLARIVDDKEDGNHDHHRSDTKPLHKTYLAGSYGYMAPEHASMQRITEKSDVYSYGVVLLEVLTGRHPLDPTLPGGAHMVQWVRNHLANKGDPSDILDPKLRGRAEPAMHEMLQTLAVSFLCVSTKPEGRPTMKDIVAMLREIRPIDENSRFLDSDELKKKAKSCLDASPYPLPPPKHLVSHQSSNVSFHFSDDSV 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1553 1116 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 563 1061 - -
Mibi05g1553 1116 Pfam Protein kinase domain 783 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1553 1116 Gene3D Transferase(Phosphotransferase) domain 1 853 1087 - -
Mibi05g1553 1116 ProSiteProfiles Protein kinase domain profile. 780 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1553 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Mibi05g1553 1116 Gene3D Ribonuclease Inhibitor 40 201 IPR032675 -
Mibi05g1553 1116 Gene3D Ribonuclease Inhibitor 621 705 IPR032675 -
Mibi05g1553 1116 Gene3D Ribonuclease Inhibitor 202 297 IPR032675 -
Mibi05g1553 1116 FunFam Leucine-rich receptor-like protein kinase family protein 347 620 - -
Mibi05g1553 1116 MobiDBLite consensus disorder prediction 1086 1105 - -
Mibi05g1553 1116 SUPERFAMILY RNI-like 91 403 - -
Mibi05g1553 1116 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Mibi05g1553 1116 FunFam Putative LRR receptor-like serine/threonine-protein kinase 621 706 - -
Mibi05g1553 1116 Gene3D Ribonuclease Inhibitor 298 392 IPR032675 -
Mibi05g1553 1116 Pfam Leucine rich repeat N-terminal domain 42 84 IPR013210 -
Mibi05g1553 1116 SUPERFAMILY RNI-like 393 682 - -
Mibi05g1553 1116 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Mibi05g1553 1116 SMART LRR_typ_2 496 520 IPR003591 -
Mibi05g1553 1116 SMART LRR_typ_2 159 183 IPR003591 -
Mibi05g1553 1116 SMART LRR_typ_2 448 472 IPR003591 -
Mibi05g1553 1116 SMART LRR_typ_2 352 376 IPR003591 -
Mibi05g1553 1116 SMART LRR_typ_2 111 135 IPR003591 -
Mibi05g1553 1116 SMART LRR_typ_2 567 591 IPR003591 -
Mibi05g1553 1116 SMART LRR_typ_2 304 328 IPR003591 -
Mibi05g1553 1116 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 853 1078 - -
Mibi05g1553 1116 Pfam Leucine rich repeat 306 365 IPR001611 GO:0005515
Mibi05g1553 1116 Pfam Leucine rich repeat 427 485 IPR001611 GO:0005515
Mibi05g1553 1116 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 219 344 - -
Mibi05g1553 1116 Gene3D Phosphorylase Kinase; domain 1 752 852 - -
Mibi05g1553 1116 SUPERFAMILY Protein kinase-like (PK-like) 759 1060 IPR011009 -
Mibi05g1553 1116 Gene3D Ribonuclease Inhibitor 393 620 IPR032675 -
Mibi05g1553 1116 SMART serkin_6 780 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1553 1116 FunFam Leucine-rich receptor-like protein kinase family protein 41 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1553 Mibi-ChrMibi05 18285694 18289693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1553 38 1116 Receptor kinase-like Gene Family AT5G56040 65.657 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi05g1553 Pkinase 1.7e-36 CL0016