Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1540 ATGAGGATCACTGTAATGACTGCTGATGAACAAATCCTTACTTTGGAAGTTGATTCCCATGAATCTGTGGAAAACTTGAAAGCATTGCTTGAGGTTGAGACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTATAATGGAAAGGAGATGAGGAATTCTGAGAAATTGAGTGCTCTTGGTGTTAAAGATGAAGATTTGGTGATGATGGTCTCTGCTGCTGATGCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGGTGCTTTAGGATTCAATCCTGATGGATCTGCTGTTAATCCTGCTGCTTTCCAGCAGCACATTAGACAGGATTCTAACTTGATAGGTCAGCTCTTTCAGACCGATCCCGAGCTGGCACAAGCTATTCTAGGAAGTGATCTTAACAGAATACAGGAGATTTTACGAGCGCGTCATCAACACAGAGCTGAATTACAGCGTCAAAAGGACGAAGAAATTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCTATACGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAATACAATCCTGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACAATTATATCAAAAAGCTGTGCTGAGCGCTGTGGATTGTTAAGACTTCTAGATCAGCGTTACAAGGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGGATACATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGCTCATTCTTGGTGCTCGATTCTCCGAACATGGAGTTCCTTTTTGGGCTGGATATGCTCCGAAAGCACCAGTGCATTATAGACTTGAAAGATAGCGTTTTGCGAGTTGGTGGAGGAGAAGTATCTGTGCCATTTTTGCATGAAAAAGACATTCCATCTCGGTTTCTCGATGAAGAGAGGTACGCTAAGGAAGCATCCAGCTCAGGTGCCACGGCAACAGGAACAGCAGATAAAAGTGGTAGTGCCCCAACAGGAGGCCATTCTTCAGGAGGAGCTTCTGGTGGCACTTCTCAGGAGAGTGAGTTTGAAGCAAAAGTTGCAAAGCTGGTGGAATTAGGGTTTGGAAGAGAAGCAGTAGTGCAAGCTCTTAAATTATTCAATGGCAATGAGGACCAGGCTGCTGGGTTTCTGTTTGGGGGTTTTTAG 1245 0.4426 MRITVMTADEQILTLEVDSHESVENLKALLEVETQVPLQQQQLLYNGKEMRNSEKLSALGVKDEDLVMMVSAADAPPPPPPPPSGALGFNPDGSAVNPAAFQQHIRQDSNLIGQLFQTDPELAQAILGSDLNRIQEILRARHQHRAELQRQKDEEIALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEYNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDSVLRVGGGEVSVPFLHEKDIPSRFLDEERYAKEASSSGATATGTADKSGSAPTGGHSSGGASGGTSQESEFEAKVAKLVELGFGREAVVQALKLFNGNEDQAAGFLFGGF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1540 414 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Mibi05g1540 414 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Mibi05g1540 414 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Mibi05g1540 414 Pfam UBA/TS-N domain 376 409 IPR015940 -
Mibi05g1540 414 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Mibi05g1540 414 Coils Coil 134 154 - -
Mibi05g1540 414 Gene3D - 1 84 - -
Mibi05g1540 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 413 IPR015940 -
Mibi05g1540 414 SMART ubq_7 1 72 IPR000626 GO:0005515
Mibi05g1540 414 MobiDBLite consensus disorder prediction 339 372 - -
Mibi05g1540 414 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Mibi05g1540 414 Gene3D - 340 413 - -
Mibi05g1540 414 SMART uba_6 375 412 IPR015940 -
Mibi05g1540 414 FunFam DNA damage inducible 1 homolog 2 179 326 - -
Mibi05g1540 414 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Mibi05g1540 414 SUPERFAMILY UBA-like 365 413 IPR009060 GO:0005515
Mibi05g1540 414 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Mibi05g1540 414 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 410 - -
Mibi05g1540 414 Gene3D Acid Proteases 180 326 IPR021109 -
Mibi05g1540 414 CDD UBA_scDdi1_like 376 411 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1540 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.42e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1540 05 18142422 18148276 Mibi05g1540 05 18142422 18148276 ECH