Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1447 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTGAAGCAGGTTTTGTCATGGAGGGTGAGTATGGGAAACAAGAGGGGCTGCATCATAATAAGACTTCTTCTGTGTTGCTTGAACTTGCAGCCTCAGATGATGTTGTGAGTTTCAGAGATGCAGTTGAGAAAGAGGGTCTTGATGTTGATGAGGCTTTCTTGTGGTATGGAAGGAGGATTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTGCTATGTTTGGAAGCAAAGGCGTATTGAGTTATATACTCGGAACCGGTCATGTTGATGTTAACCGGGTTTGTGGATCAGATGGTGCTACCGCCCTTCATTGTGCTGTTGCTGGTGGCTCAGCCTCATCCCCTGAGGTTGTTAAGCTTTTGCTTGATGCATGTGCAGATGTTAGTGCTGTTGATGCTAATGGCTACCAACCTTGTGACTTGGTTGTCTCTGGGGTTAATTCGATCTTCAATTCGAGGAAAAGGATCCTACAAGCCATACTGAAAGGTAAGGATGGTATTGATGAGGAGGCATGTTCCTCATTTGAGGATACAGTTAGCCGGATGGAAGAACAGCAACAACCATTAGATATGGCTGCATCTCGTGATTCGAAAGATGGGAATGAGAAGAAAGATTATCCAATTGATCTTTCTCTTCCTGACATAAAGAGTGGAATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCGGGGGAGAATGCTAGGCGACGTGATCCTAGAAAATATCATTATAGCTGTGTCCCTTGCCCAGAGTTTCGGAAGGGATCATGCAGCAAAGGAGATGCCTGCGAGTACGCACATGGTATTTTCGAGTGCTGGCTTCACCCTGCCCAGTATCGGACACGGCTTTGCAAGGATGAGGGTGCTTGCAACAGAAGAGTTTGCTTTTTTGCTCATAAGCCTGAGGAGCTTCGCCCCTTGTATCCTTGCACTGGTTCAGCTATACCTTCTCCTAGATCATTTTCATCTAGTTCTTGTTCATTGGATATGGGGTCGCTTAGCCCTCTCTCGCTCAGTTCTTCATCTGTCATGATTCCTCCAGTCTCAACACCGCCTCTGACCCCTACTGGTGCATCTTCTCCTGGTGGTGGAACTATGTGGCAGGCTCAATGTAATAGTGGAGTACCTTTCCTGCAACTACCAAGAAGCAGACTAAAAACTGCTTCAAATGCTAGAGATGTTGATTTAGATATTGAGTTACTTGGACTTGAAAATCACCGGCTCAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTCTCCTCGCCATCAAGCTGGAAGAATTCCATGCCTGATGGCCATTCTTTTCTGGTTTCTTTCAGTGATCAAGCTGGGGACCTGAATAGGCTTGCAGCAATGAGGCCTACCAACCTTGATGACATTTTTGGGTCAGTTGATCCATCAATTTTGCCTAAATTACAGGGAATTTCACTAGATACTGCTGGACCTCAGTTGCAATCTCCAACTGGGTTCCAGGCACTTCAGAATGCAAACCTGCATCTGCGAGGCTATTCTTCTGGACTTTCCAATTCAAACTTGATGGGATCGTCATCTTCTGTGAATGATCATCCATCTGTATCAGCAGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCCTTTTCTAAGAGAAGCCAGAGTTTTATTGAGCGCAGCAATGCGGTAAACCGTCATTCAGAGCTTTCTTCTCCGGTTTCTTCAACAACAAAGGCTTCTGCCTTATCAGACTGGGGATCTCCTGATGGGAAGTTGGACTGGGGCGTCCATGGGGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAAGCAGTAGGAGCACCCGAGTGCCAGCTAATCTCGATGAACCCGATGTTTCCTGGGTTCATTCACTTGTAAAGGATGCTCCACCGCCAGAATCTGGTCACTTTAGTGTTGAAGAACAGCAAAAGCAGCAGCTGCAATGCCATCATAACAATGGAACCGACGTGGTTCCAGCTTGGATGGAACAATTTAACATTGAGCAGGAGCAAATGGTAGCATGA 2136 0.4597 MCSGSKRKPSEAGFVMEGEYGKQEGLHHNKTSSVLLELAASDDVVSFRDAVEKEGLDVDEAFLWYGRRIGLKKLSYEERTPLMIAAMFGSKGVLSYILGTGHVDVNRVCGSDGATALHCAVAGGSASSPEVVKLLLDACADVSAVDANGYQPCDLVVSGVNSIFNSRKRILQAILKGKDGIDEEACSSFEDTVSRMEEQQQPLDMAASRDSKDGNEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACNRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSSSCSLDMGSLSPLSLSSSSVMIPPVSTPPLTPTGASSPGGGTMWQAQCNSGVPFLQLPRSRLKTASNARDVDLDIELLGLENHRLRQQMMMDEISGLSSPSSWKNSMPDGHSFLVSFSDQAGDLNRLAAMRPTNLDDIFGSVDPSILPKLQGISLDTAGPQLQSPTGFQALQNANLHLRGYSSGLSNSNLMGSSSSVNDHPSVSAATTMALNARLAAFSKRSQSFIERSNAVNRHSELSSPVSSTTKASALSDWGSPDGKLDWGVHGEELNKLRKSASFGFRSSRSTRVPANLDEPDVSWVHSLVKDAPPPESGHFSVEEQQKQQLQCHHNNGTDVVPAWMEQFNIEQEQMVA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1447 711 Pfam Ankyrin repeats (many copies) 78 136 IPR002110 GO:0005515
Mibi05g1447 711 SUPERFAMILY Ankyrin repeat 51 157 IPR036770 -
Mibi05g1447 711 Gene3D - 279 341 - -
Mibi05g1447 711 ProSiteProfiles Zinc finger C3H1-type profile. 283 305 IPR000571 GO:0046872
Mibi05g1447 711 SMART ANK_2a 77 107 IPR002110 GO:0005515
Mibi05g1447 711 SMART ANK_2a 112 144 IPR002110 GO:0005515
Mibi05g1447 711 FunFam Zinc finger CCCH domain-containing protein 66 236 304 - -
Mibi05g1447 711 SMART c3hfinal6 278 304 IPR000571 GO:0046872
Mibi05g1447 711 SMART c3hfinal6 313 336 IPR000571 GO:0046872
Mibi05g1447 711 MobiDBLite consensus disorder prediction 192 206 - -
Mibi05g1447 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 303 IPR000571 GO:0046872
Mibi05g1447 711 Gene3D - 16 218 IPR036770 -
Mibi05g1447 711 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Mibi05g1447 711 MobiDBLite consensus disorder prediction 191 220 - -
Mibi05g1447 711 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Mibi05g1447 711 PANTHER UNKEMPT FAMILY MEMBER 37 666 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1447 Mibi-ChrMibi05 17171016 17173151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1447 33 706 C2H2 Transcription Factor Family AT5G12850 39.241 2.12e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi05g1447 Ank_4 3.8e-08 CL0465