Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1429 ATGTCATCGAAGATAGGCAACCAGGCTAGTAAGCAAGCTTGCCATCGGCTTCACCACAAGTCCTTCAATTCTGGACTTCCCCTTTCCACCCCCTCCCATGCATCATCCTTCCTTCTGCCTCTGACTTCTTCTTCATCTTCTTCTTCAATGCCTTCTTCTCTCTTCCAAATGTTGCAGAGCATCTTCTCCGACAACAACAGCAACATCATGCTGGCCGCCATCATCTCCCTCCTCCTAGTCATCCTCTTCGTCCTCCTCCTTCACCTCTACGCCCAATGGTTCCTCTCCCACGCCCACCACCGCCGTCGTCTCCGCCGCCCCTCCTCCTCCGCCGTCACCGTCTCCGACGTCATCGGCCCCGCCCGCTTCCACCACTTCCACACCTTCAACAACCTTCACTCTCCCTTCCCCATTTCCCCCTCCAAAGGCCTCCATTCCTCTTCCATTTCCAAGATCCCTCTTTTTGTCTACCAACCTCACACTTTGGCACAAAATTTCCATGACCCAGATCACTTGGAATGTGTGATTTGCTTGAGTGTCTTTGAGAATGGCGAAACTGGGAGGATTTTGCCTAAATGTGGCCATGCTTTTCATGTTGGGTGTATTGATATGTGGTTGACCTCCCATTCTAATTGCCCCATTTGTAGGGCTCCCATTTTGGAGCTTCAGGATCATGATGATTCCTCCTCCTCTTCTTCTTCTGCTGCTGCTGTGCTTGAGGTTGTTATTGATTCTACTAGTTCTGAGATTGGCAATGAGAATGACCGTGGAACTGATCAGAGTATTAGTGTTAGTGCTGATGATGATGGTGATGATGATCATGGAGGAGGTGGAGGGGTTAGTGTTAGTGTTAGTGTTAGTGTGAGTGAATCGGTTGTTTCTATTTCAGAAACTTCATCCTCTTTGTTGGGTTGTTCTTTGAAGAGGATGTTCAGTCAAGTCTTTCCTTCTTCCAATGTCACTGAATTAGGCACGTCATGA 981 0.4873 MSSKIGNQASKQACHRLHHKSFNSGLPLSTPSHASSFLLPLTSSSSSSSMPSSLFQMLQSIFSDNNSNIMLAAIISLLLVILFVLLLHLYAQWFLSHAHHRRRLRRPSSSAVTVSDVIGPARFHHFHTFNNLHSPFPISPSKGLHSSSISKIPLFVYQPHTLAQNFHDPDHLECVICLSVFENGETGRILPKCGHAFHVGCIDMWLTSHSNCPICRAPILELQDHDDSSSSSSSAAAVLEVVIDSTSSEIGNENDRGTDQSISVSADDDGDDDHGGGGGVSVSVSVSVSESVVSISETSSSLLGCSLKRMFSQVFPSSNVTELGTS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1429 326 Pfam Ring finger domain 173 216 IPR001841 -
Mibi05g1429 326 FunFam RING-H2 finger protein ATL1 134 221 - -
Mibi05g1429 326 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 66 223 IPR044675 -
Mibi05g1429 326 MobiDBLite consensus disorder prediction 248 281 - -
Mibi05g1429 326 CDD RING-H2_EL5_like 173 216 - -
Mibi05g1429 326 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Mibi05g1429 326 MobiDBLite consensus disorder prediction 248 264 - -
Mibi05g1429 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Mibi05g1429 326 SMART ring_2 174 215 IPR001841 -
Mibi05g1429 326 SUPERFAMILY RING/U-box 158 222 - -
Mibi05g1429 326 SMART FANCL_C_2 170 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1429 Mibi-ChrMibi05 16926315 16929263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1429 68 243 Rapid Response to Elicitors AT3G16720 38.636 1.62e-29 113