Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1414 ATGTCTACCTCCGGCCACGATCATCACCCCCTTTCTCCATTCCAATTCCATCTTCTTCACTCCCATTCTCAATTTCATCCTCTCCACCAATTCCCTTCTGAAGATCCCCATTCTGCTTTCGCCAAGCTTGCTTTGAGTCAGAGATATGAACTTGATGATTCCAGGCCTCAGACGGGTGATAATAGAGTAGCTCCGAATCTGAGCAAAATGGTTAATCTTTCTACACTCAAAACTGAGCCTACCATAGGTGGAAAGCATCATGGTAAATCAAAAGTTTCAAGAAATGCAAAATCAGTGAATCAAGGATTAAATTCCGAGTCTTCTAATTCAACTCCGGTTAATTGCCGTTATGATAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGTCTACTTCAGGAGGCTGAGGACGGTACCCTAGATTTAAATAAAACTGCTGAGGTCTTGGAGGTCCAGAAAAGAAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAAACATCAAAGAACCATATACAGTGGAAGGGCTATGATGGACTGGGGCCAGGCGAACTAGATGGTCAAGTTACTAGATTAAAGTCTGAAGTTGAAGGTCTATATTATGAGGAATGCCGACTCGATGATATTATAAGGAAAAGGCAAGAGCTCCTAAGAACTTTGGAGGAGAAAGAAAACCATCAAAAGTTCCTTTTTTTGACTGAGGAAGATATTCTTAGCCTTCCATGCTTCCAGGATCAGACACTCATTGCCATCAAGGCGCCCCAAGCTAGTTTCATTGAAATTCCTGATCCTGATGAGGATACTGATTTCCGGCAAAGGCAGTATAAGATGATTGTTAGAAGCACCACTGGACCAATAGATTTGTACCTCTTAAGCAAACACAATGCTAATCATGAGGATGTTGGCATCAACCAGGCTACTTCAGTAGATCCTTCACAGAATGGCGATCAGTGTGGATCAAAGAATGTGGGATTATGTCTAGAAAACCAAGATGCCCAGAAAAATCCTTCTCAAAGTTTTAGCCTGCAGAACTCAGAGCAACCAGGCATTCAGAAAATCACACCAATGGATTTTGATGTGGAAGATGACTACTGGTTCCAATCAGACCATGGAGTGACCCTAACGGATTTGTGGGCGAATGAGGATTTAGTTCACATAGATGAGGTCTTCCAAGACGATTACTTAAATAGGTAA 1209 0.4119 MSTSGHDHHPLSPFQFHLLHSHSQFHPLHQFPSEDPHSAFAKLALSQRYELDDSRPQTGDNRVAPNLSKMVNLSTLKTEPTIGGKHHGKSKVSRNAKSVNQGLNSESSNSTPVNCRYDSSLGLLTKKFVSLLQEAEDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIQWKGYDGLGPGELDGQVTRLKSEVEGLYYEECRLDDIIRKRQELLRTLEEKENHQKFLFLTEEDILSLPCFQDQTLIAIKAPQASFIEIPDPDEDTDFRQRQYKMIVRSTTGPIDLYLLSKHNANHEDVGINQATSVDPSQNGDQCGSKNVGLCLENQDAQKNPSQSFSLQNSEQPGIQKITPMDFDVEDDYWFQSDHGVTLTDLWANEDLVHIDEVFQDDYLNR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1414 402 MobiDBLite consensus disorder prediction 94 111 - -
Mibi05g1414 402 FunFam E2F transcription factor 1 110 183 - -
Mibi05g1414 402 Coils Coil 211 231 - -
Mibi05g1414 402 Pfam E2F transcription factor CC-MB domain 197 296 IPR032198 GO:0046983
Mibi05g1414 402 PANTHER TRANSCRIPTION FACTOR E2F 89 388 IPR015633 GO:0000978|GO:0006357
Mibi05g1414 402 SMART E2F_TDP_2 116 181 IPR003316 GO:0005667|GO:0006355
Mibi05g1414 402 SUPERFAMILY E2F-DP heterodimerization region 193 298 IPR037241 -
Mibi05g1414 402 SUPERFAMILY "Winged helix" DNA-binding domain 116 179 IPR036390 -
Mibi05g1414 402 Gene3D - 112 183 IPR036388 -
Mibi05g1414 402 MobiDBLite consensus disorder prediction 79 111 - -
Mibi05g1414 402 CDD E2F_DD 193 299 IPR032198 GO:0046983
Mibi05g1414 402 Pfam E2F/DP family winged-helix DNA-binding domain 118 181 IPR003316 GO:0005667|GO:0006355
Mibi05g1414 402 Gene3D - 188 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1414 Mibi-ChrMibi05 16744596 16749191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1414 2 385 E2F-DP Transcription Factor Family AT1G47870 45.626 1.00e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mibi05g1414 E2F_CC-MB 9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1414 05 16744596 16749191 Mibi05g1414 05 16744596 16749191 ECH