Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1402 ATGAACCAGAAGGATATCGTTAGATTCTTGACCACAACCATCGATAGTTTCATTCAAGACCGGTTAATTGACAAAGAAAGAAGGATCCAACACAAAGAACAGTGCGCAGAGAGATTAGCGGCTGAAGATGAAAGCATTGATAAAGACAGTGAAGTTCAATACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATTGAAGCACTTGAAGAAGCTATTGATACATATAACATGGAAACTAAGATTGCTCGCTTAGATTATGCTGAGAAGATGTTACAAGTGTGTGCCATGTTAAATCCTGTTCGAAAAACTGCTGGAGTTCCCAATTTCTACCTCTCAGCATGGGCTCACCTTAATTTATCCTACCTATGGAAGTTGAGGAACAATGTTCAAAATTCAATTTGCCATGCTCTTGAGATGTTCATTGTTGACCCTTTCTTTTCGCGGATTGATTTTGCTCCAGAGCTTTGGAAAGATCTGTTTCTTCCAAACATGAGTTCCATTGTTGGTTGGTATTCAGAGGAGAGGCATAGGCTTATGATGGAAGTCATACCTGACTCTTCAGATTTGTCTTTTACAGCTGATTTCGATCAGTTCTTCAATGAGTCTTTGATATATACTATGGGGCCACATCAGGTAGAGAAGCTGCAGAATCTGGAGAAGCTTTATGGAGAGTCATTAGACAAGAACACAAGACTTTATGCAAAGTATTATAAGGATTGCATCAGCCCTGATTCAACCTCCTCCAGCAAGAAGGCTCCGATGTTACCAATCGCGGAGCCACCAATGACACCTATGCATGAGTTGAGCAGCTCCATTCCTGACTATGTAAAATTTGGTCCTATATTGCCTAAGAGTGCTGGGTTTTCTCCTGTTCTAAAATCTAAAGATAATGGTGCCAATGAAACTATCAGAGGGAATGTGACTTCCAGCCGTTCACAAAAGGCAGAGAAGTCATCATCTACATGGGGTGTTAAGGAGAGTACCATTGGAGAGTATGAAGACTCAGATGATGACCCCAATGATTCATACATTGATTTAGATAGAAAAACTCAACCTATTGCATCTCCTAAAATTAACAATATCAAGGACAAGGATATGGAGCCAAAGTCACATCAATCAAATTCGAACCAGAAGAATCAAATATTTTCTCCTCCAGTTTTTTCTCCTTTGGATTCTCCAAGAGCTTCTCCAAAAACTTCATCTTCAGTTCATGCGATACGAACTATAGGAGAACCCAAATCTTTGCGCTTATTGTCTAAGCGTTTTTCAGACTCAAGTATTCCCAACTCTTCACCAATATCTCCACACATGAGTACTGATCACAGCGTAAGCTCAGAAGATTCTGATAACGAAATAATGGGAGTGAAGAACAGTCAGAGGAAGTACCATCACTCAGAAAAGATTATTATTCATGACCAAGAGACTATCCATTCATTCATTGACAATTCCCTTAACGAGAGCCATGAGGGAAATAGCAGCAGCAGTTTATCACTGAGATCAGAGAAGAATACCATTCAATCAAGACCACCCAAAGATTTTGTTTGTCCTATCACAGGCCAGATATTTTGTGATCCAGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTCAAAACAGGAAATACGACATGTCCCATTACGCGGCAATCTATCTCGGCTAGCATACTACCTAAAACAAACTATGTCTTGAAGAGACTGATAACTTCATGGAAAGAACAACATCCAGAACTAGCTCAAGAGTTCTCAAATTCTATAAATTCTCCCTCTGTCAAAGATATCCCAGTGGTCTCTAATAATATGTACAGAACAGCTGACTCACCAGCTCATAAGAATGCAAATGATAATATTAGACAAAGGAGCAAAAGATTTATGCAGGTCTGTGTCGCATCATCACCAACTAGTATAATATCTCAAGCTGAAGTTGAGACAATTATAAATTGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACCTGCAAGAATGTGAAGATTCTATATCGGCTATAGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTTATTTATCAAATCCAACAGTTATAAATGGTTTAGTGGAAATACTTTCAGCTTCTCTAAATAGAGAAGTTCTAAGAACATCAATTTATATCCTGTCTGAGCTAATTTTTTCAGATGAAAGTGTTGGAGAAATACTCTCCAATGTTGATTCTGATTTTGATTGCTTGGCTACTCTGCTTAAGAATGGTTTAATTGAAGCTGCCGTTCTAATTTACCAACTGAAACCGGTTTATGATCAACTCTCTGCTCATGAATTAATACCCTCCATTGTCCAGCTGATCCAGAACAAAAATGAGGAGCTTGACAATCTTCGATTCCTTATTGATCCGAGAGATGCAGCTGTAGCAATTCTTGAGCAGATTTTACTAGGAGGGAATGAATATAGCAGGTCACTCAATGCTTTGAGTGTCATTTCAGCAAATGGAATTCCAATATTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATACTATTGTGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCAAACAGAATTGAATTATCTCCTGTTCTTGAATTATTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCACAGCTTGTTCAATTGCATAGGAGAACACTGTGCAACAAGTTATTGCAGATTATCAAGGATGAAGGAGCATTTAGTACCATGCATACATTTCTTGTGTATCTTCAGATGGCACCTATGGAGCATCAACTTGCAGTAGCTAGTCTTCTGCTTCAACTTGATCTCCTGGTTGAGCCACGCAAGATGAGTATTTTCAGGGAAGAAGCCGTTGAGGCCCTGATAGAATCACTTTGGCGAAAGGACTTCTCAAATACTCAGACAAAGGCTTTAGACGCTTTACTGCATCTTATTGGGCATCTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGATTGCAGGATTTGACCAACCTTATACTTCTCTAATGAATGCTGAGCAGTTGGAAAAACATGACAACGATTTGGTAGAAACAATGGAGGATGAAGAAAATGCTATGAGCTCTTGGCAGAAAAAGGTAGCTTTTGTTCTCTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGCCTCAAGAGTACTTCCCTAGAGACAGCCAAGTCATGCCTTGTTGTTGCCACGTGGCTGACACAAATGCTCTCAACCATTCCTGATACTGGTATAAGGGATGTTGCTCGAATATCCTTGCTTGAGGAACTTATAAATGTCCTCCAATCATCCAAGAACCTCGAGGAAATGATCCTAGCTACCCTTGCTTTGAAGAACTTCATTAATGATCCAATTGCTCTTGAAGCACTAGGAACTTATGCCAAAAGCATCTATAAAACATTGAGAAAGTTGAAGAAATATTCTGTGGTGGCTGCCGATATTATGAAAGCCTTACTAAACTTAAAATCCGTTGATGTGGCAGCATTGTGGAATTGTAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTGAGTGGACACTCTGATGGAACCATGAAGGTTTGGGACGCTAAGAAGAGAATTTTAAGATTGATCCAAGAAACTCATGAACACACTAAAGCTGTAACATGTCTCTACTCTTCAAGCGATAAACTGTACAGTGGCTCCTTAGACAAGACAATACGGGTATGGACGATGAAATATGATGAGGTTAAATGTATTCAAGTTCATGATATTAAAGAGGCTGTGTATGAGTTGATAGCAAATGATAAATTGGCTTGCTATGTAACTCAAGGAACTGGAGCTAAGGTATATAATTGGTCTGAGGCTCCAAAGCTTATTAATTTCAACAAACATGTGAAATGCCTTGCAATGTCTGGGAACAAACTATATTGCGGTTGCTCTGGTTACCTTGTTCAGGAGGTAGACTTGTCGAATTATACATCAAGTACAATTTTATCCGGGACAAGAAAATTGCTGGGAAAACAAACCATTCACTCCCTTATGATTTATGATGATTTTCTTATCGCTGGTGGTTCTTTGGTTGATTCAACCGCAGGAAAGATATTGTCATTGTCGTCCAAAGAAGTGGTGGGGTCACTCTCAACAGGTCTAGATATCCTCCGTATGGCCATGAACAGTGACTTCGTATTTACAGGCACTAAATGTGGCACTATTGAGGTATGGCTAAAATATAAGCTAAGTAGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACGTCACTAGCTTCAGATTCAGATGGTGTAATGCTTTTTGTTGGTTCCTCTGATGGCAAGATTCAGGCTTGGGCTTTGGATTAG 4446 0.3941 MNQKDIVRFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKDSEVQYSDQAVLANLDWGIEALEEAIDTYNMETKIARLDYAEKMLQVCAMLNPVRKTAGVPNFYLSAWAHLNLSYLWKLRNNVQNSICHALEMFIVDPFFSRIDFAPELWKDLFLPNMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLIYTMGPHQVEKLQNLEKLYGESLDKNTRLYAKYYKDCISPDSTSSSKKAPMLPIAEPPMTPMHELSSSIPDYVKFGPILPKSAGFSPVLKSKDNGANETIRGNVTSSRSQKAEKSSSTWGVKESTIGEYEDSDDDPNDSYIDLDRKTQPIASPKINNIKDKDMEPKSHQSNSNQKNQIFSPPVFSPLDSPRASPKTSSSVHAIRTIGEPKSLRLLSKRFSDSSIPNSSPISPHMSTDHSVSSEDSDNEIMGVKNSQRKYHHSEKIIIHDQETIHSFIDNSLNESHEGNSSSSLSLRSEKNTIQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSISASILPKTNYVLKRLITSWKEQHPELAQEFSNSINSPSVKDIPVVSNNMYRTADSPAHKNANDNIRQRSKRFMQVCVASSPTSIISQAEVETIINCLKPYISSLCTSEDLQECEDSISAIARLWKDSKNDPHIHSYLSNPTVINGLVEILSASLNREVLRTSIYILSELIFSDESVGEILSNVDSDFDCLATLLKNGLIEAAVLIYQLKPVYDQLSAHELIPSIVQLIQNKNEELDNLRFLIDPRDAAVAILEQILLGGNEYSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQAEKSCRSLIANRIELSPVLELFHSGNDSVRGICVEFLSQLVQLHRRTLCNKLLQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAVEALIESLWRKDFSNTQTKALDALLHLIGHLTSSGKSYTEAWLLKIAGFDQPYTSLMNAEQLEKHDNDLVETMEDEENAMSSWQKKVAFVLCNHEKGSIFKALEECLKSTSLETAKSCLVVATWLTQMLSTIPDTGIRDVARISLLEELINVLQSSKNLEEMILATLALKNFINDPIALEALGTYAKSIYKTLRKLKKYSVVAADIMKALLNLKSVDVAALWNCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDAKKRILRLIQETHEHTKAVTCLYSSSDKLYSGSLDKTIRVWTMKYDEVKCIQVHDIKEAVYELIANDKLACYVTQGTGAKVYNWSEAPKLINFNKHVKCLAMSGNKLYCGCSGYLVQEVDLSNYTSSTILSGTRKLLGKQTIHSLMIYDDFLIAGGSLVDSTAGKILSLSSKEVVGSLSTGLDILRMAMNSDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHTKITSLASDSDGVMLFVGSSDGKIQAWALD 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1402 1481 SMART WD40_4 1438 1479 IPR001680 GO:0005515
Mibi05g1402 1481 SMART WD40_4 1233 1270 IPR001680 GO:0005515
Mibi05g1402 1481 SMART WD40_4 1190 1228 IPR001680 GO:0005515
Mibi05g1402 1481 SMART WD40_4 1399 1435 IPR001680 GO:0005515
Mibi05g1402 1481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 595 IPR013083 -
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 374 388 - -
Mibi05g1402 1481 SMART Ubox_2 514 578 IPR003613 GO:0004842|GO:0016567
Mibi05g1402 1481 ProSiteProfiles U-box domain profile. 510 585 IPR003613 GO:0004842|GO:0016567
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 395 409 - -
Mibi05g1402 1481 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1480 - -
Mibi05g1402 1481 ProSiteProfiles Trp-Asp (WD) repeats profile. 1447 1481 IPR001680 GO:0005515
Mibi05g1402 1481 SUPERFAMILY WD40 repeat-like 1212 1480 IPR036322 GO:0005515
Mibi05g1402 1481 Pfam WD domain, G-beta repeat 1449 1478 IPR001680 GO:0005515
Mibi05g1402 1481 Pfam WD domain, G-beta repeat 1240 1269 IPR001680 GO:0005515
Mibi05g1402 1481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1447 1481 - -
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 485 506 - -
Mibi05g1402 1481 Pfam U-box domain 512 582 IPR003613 GO:0004842|GO:0016567
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 485 512 - -
Mibi05g1402 1481 CDD RING-Ubox_PUB 515 557 IPR045210 -
Mibi05g1402 1481 Gene3D - 1178 1481 IPR015943 GO:0005515
Mibi05g1402 1481 SUPERFAMILY ARM repeat 618 1180 IPR016024 -
Mibi05g1402 1481 SUPERFAMILY RING/U-box 500 583 - -
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 292 410 - -
Mibi05g1402 1481 Coils Coil 1026 1046 - -
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 424 451 - -
Mibi05g1402 1481 Gene3D - 656 932 IPR011989 -
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 424 443 - -
Mibi05g1402 1481 MobiDBLite consensus disorder prediction 297 328 - -
Mibi05g1402 1481 ProSiteProfiles Trp-Asp (WD) repeats profile. 1240 1272 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1402 Mibi-ChrMibi05 16665515 16672565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1402 493 901 U-box Gene Family AT1G23030 26.253 2.34e-20 95.5