Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1382 ATGCAAGAAACTTGCGTTCTTACTCGATCTGCTCTTGCAGGAGGCGATTCCGTAAATATTTTTTCCCCCAAAATGACTCAAGATGTTGAGATGAAAGATCACACAACTCCTTCGCATTCTGTTTCTTTAGCTGCTCCATCTACTTTCCAGCAATTAAGGGAGATAGCATCACTTATTGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATTGCTCGTGCCGTTCGCCTTACAATTGCGTTGAGGCGCAAATTGACAGCATCTACGATCTTGTCTTTTATCGATTTTGTTGGTTGTCCGGGTTCTGAGCCTCACGCCAGATTGTGTGCCTATCTTCCGGAGGAAAATTGTAATGGGATGGAAGTAGATAGTGAAACATCTATCGTTCAATCCTCAGCTAAGCATATATTGCCTGAGATGGAGATGTACTGTTATTTGCTCATACTACTTTTTCTTATCGATCAGAAGAGATATAAGGAGGCTAAAGCATGTTCCTCAGACAGCATTGCCCGATTGAAGAACATTAACAGAAGAACTGTTGATGTTATTGCATCCAGATTGTACTTCTATTATTCATATATTCATGAACTCACAGGAGATCTTGCAGAAATTCGGGGTAACCTTCTTGCGTTGCACCGGATAGCTACCAGTCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTGCTTCGTAACTACCTCCACTACAACCTATTTGATCAGGCGGAGAAGTTGAGATCTAAGGTGCCACAATTTGAAGCACATTCAAACCAGCAGTTCTGTCGGTATCTTTTCTACCTCGGGAAAATTCGGACAATTCAGTTGGAGTACACTGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGAAAAGCTCCAGTTGCGGCACTTGGTTTTCGAATTCAGTGTAATAAGTGGGCTATAATAGTGCGTTTGCTGTTGGGAGAAATACCTGAGAGGACCATCTTCACGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCAGTTAGAATTGGAGACCTGGAGCTATTTAGGAATGTTGCAGATAAGTTTGCTACTACTTTCAGTGCTGATGGAACACATAATTTGATTGTTAGGTTGCGTCATAATGTCATCAGGACTGGATTACGAAACATTAGTATTTCATATTCTCGGATCTCGCTCGCTGATGTGGCACAAAAGTTAAGGCTAAACTCTGCAACCCCCATTGCAGATGCCGAGAGCATCGTAGCCAAGGCCATCAGAGATGGTGCAATTGATGCTACATTGGAGCATGGTAATGGGTGGATGGTGTCTAAGGAAACTGGAGATATATATTCCACTACTGAGCCTCAAGTGGCTTTTAATTCTCGTATTGCCTTCTGTCTTGATCTGCACAATGAAGCCATCCGAGCTCTGCGTTACCCGCCAAACACAAATGACGGGAAGGAAAGCGCCGAGAAGCGGAGAGAAAGGCAGCAGCAGGAGCAAGAACTGGCCAAGCACATTGAAGAGGAGGAGGAGGATGATTTCTGA 1536 0.4375 MQETCVLTRSALAGGDSVNIFSPKMTQDVEMKDHTTPSHSVSLAAPSTFQQLREIASLIETGSYSKEVRRIARAVRLTIALRRKLTASTILSFIDFVGCPGSEPHARLCAYLPEENCNGMEVDSETSIVQSSAKHILPEMEMYCYLLILLFLIDQKRYKEAKACSSDSIARLKNINRRTVDVIASRLYFYYSYIHELTGDLAEIRGNLLALHRIATSRHDELGQETLLNLLLRNYLHYNLFDQAEKLRSKVPQFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRIQCNKWAIIVRLLLGEIPERTIFTQKGMEKALRPYFELTNAVRIGDLELFRNVADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLNSATPIADAESIVAKAIRDGAIDATLEHGNGWMVSKETGDIYSTTEPQVAFNSRIAFCLDLHNEAIRALRYPPNTNDGKESAEKRRERQQQEQELAKHIEEEEEDDF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1382 511 SUPERFAMILY "Winged helix" DNA-binding domain 370 446 IPR036390 -
Mibi05g1382 511 SMART PINT_4 369 462 IPR000717 -
Mibi05g1382 511 ProSiteProfiles PCI domain profile. 263 444 IPR000717 -
Mibi05g1382 511 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 29 502 - -
Mibi05g1382 511 Pfam Proteasome regulatory subunit C-terminal 444 510 IPR013586 GO:0000502|GO:0030234|GO:0042176
Mibi05g1382 511 Coils Coil 483 509 - -
Mibi05g1382 511 MobiDBLite consensus disorder prediction 481 501 - -
Mibi05g1382 511 Pfam PCI domain 335 440 IPR000717 -
Mibi05g1382 511 Gene3D - 259 465 - -
Mibi05g1382 511 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 369 462 - -
Mibi05g1382 511 FunFam 26S proteasome non-ATPase regulatory subunit 3 144 467 - -
Mibi05g1382 511 MobiDBLite consensus disorder prediction 474 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1382 Mibi-ChrMibi05 16419555 16431101 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2627 08 44014287 44017456 Mibi05g1382 05 16419555 16431101 CCT
Mibi05g1382 05 16419555 16431101 Mibi05g1382 05 16419555 16431101 ECH