Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1380 ATGATCGATTCGGTTCTTCTGGCTCTTTTCTTGCCATGTCTAGGCATGAGCGCAGTTTTCATAGTCTACATGTGTCTTCTCTGGTACGCCACCACCCACCGCCCTCAAATTTCTCTTCCTTCGAAGCCTTCTCAGGCGAAGGGCTTGTCGTCGTCGGAGCTCGAGAAGATGCCTAAGGTTACCGGGAAGGAACTTGTTATGGGGAGTGAATGTGCTGTTTGTCTCGATGAGATCGAGAACGAGCAACCGGCTCGTCTTGTTCCAGGTTGCAACCATGGATTCCATGTTGAATGTGCCGATGCTTGGCTTTCTAAGCATCCTTTGTGTCCTGTTTGTAGGGCTATGCTTGATCCTGAGATTCTCAAGCCCTGTGATAATCCTTGTTAA 387 0.491 MIDSVLLALFLPCLGMSAVFIVYMCLLWYATTHRPQISLPSKPSQAKGLSSSELEKMPKVTGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADAWLSKHPLCPVCRAMLDPEILKPCDNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1380 128 Pfam Ring finger domain 70 113 IPR001841 -
Mibi05g1380 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Mibi05g1380 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 121 - -
Mibi05g1380 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Mibi05g1380 128 SUPERFAMILY RING/U-box 54 118 - -
Mibi05g1380 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1380 Mibi-ChrMibi05 16403914 16404300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1380 1 120 C3H Transcription Factor Family AT5G42200 55.556 1.25e-44 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1380 05 16403914 16404300 Mibi05g1380 05 16403914 16404300 ECH