Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1308 ATGACTGCGGATAGGGTGACGGCGGCGACGGCGGAGGAGACGGCGGCGGGGAGGGATGAGAGAGAGGAGAAAAGGAAGAGAATGTTCTCTTTATCTAGATCTTCTTCTTCATCCTCGTCGTCGTCGACGACTTCAGATGATAGAGAGTATGAAGTTCAAGACCTGAGAGATAGGTTGAAATCTTCAAGAGGAAGCCGATTCCAATTGATTCAGACTGAGTTGGAGGAGCTCAATCGAAAGAAATTCAGCCGCCATGTCCTTGATGGCATCCGAGGATTCCCCAAAGATTTCATCATCCATCCTGAGAAGACCAGGTGGCATCGGGCATGGACAAAATTCATATTGTTGTGGGCAATATATTCATCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGACTAGATGAGGATCTCTTTATATTAGACATAATAGGTCAAGTAGCATTTCTTGTAGACATTGTTGTGCAATTCTTCCTTGCTTATAGAGACAGTCAAACCTATCGTATGATCTACAAGCCAAGCTCTATTGCTCTACGGTATCTAAAATCAAGCTTTATCTTTGATCTTCTTGGATGTATGCCTTGGGACATCATATATAAGGCTAGTGGACGAAGAGAGGGGGTGAGGTATCTTCTATGGATAAGATTATATCGGGTGCGAAAAGTGACTGAGTTTTTTCAAAGGATTGAGAAGGATATACGTATTAATTACATGTTTACTAGGATTGTGAAACTTCTAGTAGTTGAACTCTATTGCACCCATACAGCTGCTTGCATCTTCTATTATTTGGCCACCACACTACCTCAATCACAAGAGGGATACACATGGATAGGAAGTTTACAGCTGGGCGACTATAGCTACATGCATTTCAGAGACATTGATCTTTGGAAGCGTTATACAACATCCTTGTATTTTGCTATTGTTACAATGGCCACAGTTGGTTATGGAGACATACATGCAGTAAATATGAGGGAAATGATATTTATAATGATATATGTTTCATTTGATATGGTTCTTGGCGCTTATTTAATCGGTAACATGACAGCTTTAATAGTGAAAGGATCAAAAACGGAAAAGTTTAGAGATAGAATGACAGATCTTTTAAAGTATATGAATAGAAATAGACTTGGAAGGGATATCCGTGAGCAAATAAAAGGTCATATGCGCTTACAATATGAGAGTAGTTACATTGAACCAGCTGCCATTCAGGATCTCCCTATTTCAATTCGCTCCAAGGTATCCCAAGAGTTATATTTGCCATACATTGAGAAAGTACCTTTATTCAAGGATTGCTCTTCAGAATTTATCAATCAAATCGTTATAAGGCTCCATGAGGAATTCTTTCTCCCAGGAGAAGTGATATTGGAGCAAGGAAATGTTGTAGATCAACTATACTTTGTCTGCCATGGTGTGCTGGAGGAAGTAGGCCCTGGTGAAGATGGATCTGAAGAGACTGTTTCACTCTTAGAGCCAAACATTTCATTTGGACATATATCTATTCTATGCAACATTCCTCAACCATATACAGTTCGGGTTTGTGAACTGTGTCGGCTTCTTCGGCTTGATAAACAATCATTTACGGATATCCTTGATATATACTTCTATGATGGGAGGAAAGTATTAAATAACCTTCTAGAGGGAAAAGACTCTAGTCGAGGGAAGCAATTGGAATCAGATATCACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTAAAGGTCAACAATGCAGCTTTTAATGGGGAGCTAAATCATCTTAAAGGATTGATTCGAGCTGGAGCTGACCCAAACAAAACAGATTACGATGGACGATCACCGTTGCATCTTGCGGCATCTAGAGGATATGAAGAGATCACCACTTTCCTTATGCAGGAAGGGGTGGAAATTGATATGAGAGATAACTTTGGCAACACACCCTTATTTGAAGCTGTGAAGAATGGACATGATCGAGTTGCTTCTTTACTTGTTGGAAAGGGGGCTTCTTTGAACATAGAGGATGCCGGTAGTGTTCTATGTAATGCCGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTATTAGCTAATGGATTGGATCCTAACACAAAAGATTACGATTACCGAAGCCCTCTTCATGTTGCTGTAGCTGAGGGTTTATTCTTAATGGCAAAGTTGCTGATAGAAGCTGGAGCTAGCGTTTTCATTCAAGACAGATGGGGAAATACCCCACTTAATGAAGCCAGAAAGTGTGGAAATAATAATTTGATCAAGCTTTTGGAACATGCAAAGTCTACCCAATTGTCAGAATTCCCTCATCTCTCATCAGATCTTACAGATAAGTTTCTTCCTAAGAAATGTACAGTTTTTCCTTTCCACCCCTGGGATGATCCGAAAGAACATAGAAGACATGGTATTGTGCTATGGATTCCACACTCAATTGAAGAACTTATCAAAACAGCAGCAGGGCAACTAGATGTTTTTAGTGATTGCTCTATTTTAACAGAGGATGCTGGTAAAATCACAGATGTGAACATGATTATAGATGGTCAAAAGCTATATTTAGTCCATGAAACACAATAA 2565 0.3981 MTADRVTAATAEETAAGRDEREEKRKRMFSLSRSSSSSSSSSTTSDDREYEVQDLRDRLKSSRGSRFQLIQTELEELNRKKFSRHVLDGIRGFPKDFIIHPEKTRWHRAWTKFILLWAIYSSFFTPMEFGFFRGLDEDLFILDIIGQVAFLVDIVVQFFLAYRDSQTYRMIYKPSSIALRYLKSSFIFDLLGCMPWDIIYKASGRREGVRYLLWIRLYRVRKVTEFFQRIEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPQSQEGYTWIGSLQLGDYSYMHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLLKYMNRNRLGRDIREQIKGHMRLQYESSYIEPAAIQDLPISIRSKVSQELYLPYIEKVPLFKDCSSEFINQIVIRLHEEFFLPGEVILEQGNVVDQLYFVCHGVLEEVGPGEDGSEETVSLLEPNISFGHISILCNIPQPYTVRVCELCRLLRLDKQSFTDILDIYFYDGRKVLNNLLEGKDSSRGKQLESDITFHIGKQEAELALKVNNAAFNGELNHLKGLIRAGADPNKTDYDGRSPLHLAASRGYEEITTFLMQEGVEIDMRDNFGNTPLFEAVKNGHDRVASLLVGKGASLNIEDAGSVLCNAVARGDSDYLKRLLANGLDPNTKDYDYRSPLHVAVAEGLFLMAKLLIEAGASVFIQDRWGNTPLNEARKCGNNNLIKLLEHAKSTQLSEFPHLSSDLTDKFLPKKCTVFPFHPWDDPKEHRRHGIVLWIPHSIEELIKTAAGQLDVFSDCSILTEDAGKITDVNMIIDGQKLYLVHETQ 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1308 854 SMART ANK_2a 734 763 IPR002110 GO:0005515
Mibi05g1308 854 SMART ANK_2a 604 633 IPR002110 GO:0005515
Mibi05g1308 854 SMART ANK_2a 668 697 IPR002110 GO:0005515
Mibi05g1308 854 SMART ANK_2a 701 730 IPR002110 GO:0005515
Mibi05g1308 854 SMART ANK_2a 637 666 IPR002110 GO:0005515
Mibi05g1308 854 Gene3D - 670 764 IPR036770 -
Mibi05g1308 854 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Mibi05g1308 854 CDD CAP_ED 428 542 IPR000595 -
Mibi05g1308 854 FunFam Potassium channel KAT2 416 553 - -
Mibi05g1308 854 SUPERFAMILY Ankyrin repeat 577 755 IPR036770 -
Mibi05g1308 854 Pfam Cyclic nucleotide-binding domain 448 532 IPR000595 -
Mibi05g1308 854 ProSiteProfiles Ankyrin repeat region circular profile. 637 668 - -
Mibi05g1308 854 SUPERFAMILY Voltage-gated potassium channels 104 353 - -
Mibi05g1308 854 SMART cnmp_10 428 546 IPR000595 -
Mibi05g1308 854 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Mibi05g1308 854 PANTHER POTASSIUM CHANNEL AKT1 75 851 IPR045319 GO:0005249|GO:0006813
Mibi05g1308 854 Gene3D Jelly Rolls 399 561 IPR014710 -
Mibi05g1308 854 ProSiteProfiles Ankyrin repeat region circular profile. 701 733 - -
Mibi05g1308 854 Pfam KHA, dimerisation domain of potassium ion channel 779 849 IPR021789 -
Mibi05g1308 854 ProSiteProfiles Ankyrin repeat region circular profile. 604 636 - -
Mibi05g1308 854 ProSiteProfiles KHA domain profile. 780 854 IPR021789 -
Mibi05g1308 854 Pfam Ankyrin repeats (3 copies) 578 668 IPR002110 GO:0005515
Mibi05g1308 854 Pfam Ankyrin repeats (3 copies) 673 756 IPR002110 GO:0005515
Mibi05g1308 854 FunFam Potassium channel SKOR 108 353 - -
Mibi05g1308 854 MobiDBLite consensus disorder prediction 31 46 - -
Mibi05g1308 854 Pfam Ion transport protein 107 353 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mibi05g1308 854 ProSiteProfiles cAMP/cGMP binding motif profile. 428 548 IPR000595 -
Mibi05g1308 854 Gene3D - 562 669 IPR036770 -
Mibi05g1308 854 MobiDBLite consensus disorder prediction 1 51 - -
Mibi05g1308 854 Gene3D - 109 354 - -
Mibi05g1308 854 PRINTS EAG/ELK/ERG potassium channel family signature 252 262 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi05g1308 854 PRINTS EAG/ELK/ERG potassium channel family signature 300 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi05g1308 854 PRINTS EAG/ELK/ERG potassium channel family signature 344 353 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi05g1308 854 PRINTS EAG/ELK/ERG potassium channel family signature 143 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi05g1308 854 PRINTS Ankyrin repeat signature 605 620 IPR002110 GO:0005515
Mibi05g1308 854 PRINTS Ankyrin repeat signature 653 667 IPR002110 GO:0005515
Mibi05g1308 854 ProSiteProfiles Ankyrin repeat profile. 637 669 IPR002110 GO:0005515
Mibi05g1308 854 SUPERFAMILY cAMP-binding domain-like 356 545 IPR018490 -
Mibi05g1308 854 MobiDBLite consensus disorder prediction 14 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1308 Mibi-ChrMibi05 15777514 15783608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1308 675 754 Ion Channels AT5G37500 35.294 5.78e-09 57.8