Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1304 ATGACTAGAAAGAAGGTGAAGCTGGCATTCATAGCAAACGACTCTGCTAGAAAAGCCACATACAAGAAAAGAAAGAAGGGTCTCATAAAGAAGATCGATGAACTCACCACCCTCTGTGGAATCGAGGCCTGTGCCATTGTTTACAGTCCGTACGATTCCCAGCCTGAAATTTGGCCCTCGCCGTTCGGAGCCCAACGTGTGCTTTCGAAATTCCGGCGAATGCCAGAACTTGAACAGAGCAAGAAGATGGTGAATCAAGAGGGGTTTCTGAAACAGAGGATTCTGAAGGCAAAGGAGCAATTGAAAAAACAGAGGAAGGATAACAGAGAGAAGGAGATGACCCAAATCATGTATCAGTATCTAAGTGCAGGGAAGGTACTTCATAATATGACTTTGATTGATCTTAATGATTTGGCTTGGCTTGTTGAGCAGAATCTGAAGGATGTGAATCGGAGGATTGAGACTTTGGACAAGAGGGCCCACAGTCAGAGGGCTGCTGACGTGGCGGCTATGGCGGCGGCTGATGCGGCCGCAAGGGGCCGCGACAAGGCGAAGATGGAGCAGGCCGATGTGGCGGCGCCGGTGACCGGAGGCGGCGGCGGCGGCGGCGGAGGGGATGGTATGACGAAGCAGCAGTGGTATATGGATATGATGAATGGTAATGGTAATGGTGCTGATGAAACGATGCCGTTTGGAGATTTGGGTCATTCCAATGCGTTTTGGCAAAATCAATACTTCCCTTGA 744 0.4987 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAIVYSPYDSQPEIWPSPFGAQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQIMYQYLSAGKVLHNMTLIDLNDLAWLVEQNLKDVNRRIETLDKRAHSQRAADVAAMAAADAAARGRDKAKMEQADVAAPVTGGGGGGGGGDGMTKQQWYMDMMNGNGNGADETMPFGDLGHSNAFWQNQYFP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1304 247 PANTHER MADS BOX PROTEIN 3 149 - -
Mibi05g1304 247 Coils Coil 91 114 - -
Mibi05g1304 247 MobiDBLite consensus disorder prediction 182 211 - -
Mibi05g1304 247 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mibi05g1304 247 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mibi05g1304 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mibi05g1304 247 Coils Coil 146 166 - -
Mibi05g1304 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi05g1304 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi05g1304 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi05g1304 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi05g1304 247 Gene3D - 13 124 IPR036879 GO:0003677|GO:0046983
Mibi05g1304 247 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mibi05g1304 247 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1304 Mibi-ChrMibi05 15692429 15693172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1304 1 175 Type I MADS-box Gene Family AT5G48670 60.571 7.09e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi05g1304 SRF-TF 7.9e-17 No_clan