Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1303 ATGGTTTTGTCCTGGTCCAAAAGAAGAGTCTTCCGTCGTGGCCACAAAGGCAAAGACCTCACCGGCGCCGCCGACTTGGACGTTGAGTTTGTGGTCCCCACCCACTTCCGGTGCCCAATCACCCTCGACCTCATGACAGATCCGGTGACTTTACCCACCGGAATTACCTACGACAGGGACAGCATCGAAAAGTGGTTAGAATCCGGCAACCGGACATGCCCCGTCACCAACCAACCTCTAACCACCTTTGACATCATCCCAAACCACACCATCCGTCGGATGATCCAAGAATGGTGCGTCCAGAATCGATCCTACGGCATCGAGAGGATCCCCACGCCCAGAATCCCGGTCACCCACTACGAAGTCTCCGAGATTTGCTCAAAAATAATGTCGGCAACACAGCGTGGGGACCACACCAAGTGCCAACAATTAGTGCATAAGATCAAGATTTGGGGCAAGGAGAGTGAAAGAAACAAGAAGTGTATTCTTCAGAATGGAGCCGCCGCCACGTCATTAGCCAACGCCTTTAGTTCTTTCTCAAACATATCAATTGAGAAATACATTGGCCTACTTGAGGAGATTCTGGGAATCTTGACATGGATTCTCCCAAAGGGACAGGAATCTTGTTATATGTTGAGTTCTGAATCTTCTTTACGTTGCATGGTTTGGTTCATGAACAGCAAGGATCTCTCATCAAGGCAAAACGCAGCGTTGGTGATGAAACAAGTGCCCATAGAGCCATTACCTAAAGCTGAAGGTGTTATTGAAGCTTTAGTGAAGATGATTAAGGAGCCGGTGGGTCCCTCTGCAACAAAAGCAAGCCTGAAAGTGATTTTCCAGATGGTTTCTTCATCAAATATGGAGAATAAAGAGAAGGTAATCAAAAGATGTGTGGAACTAGGCCTGGTTAATTTGTTGGTTGAGGCATTAGTGGATGGAGATAGAGGGATATGTGAGAGGGCTTTGGGGATTTTGGATCGTGTGTGTGATTATAAGGAAGGGAAGGAAGTGGGTAAGGCTAATGTGTTGACTTTGCCCCTTGTGGTGAAGAAGATATTGAGGGTTTCTGGGTTGGCTTCTGAATTTGGAGTTGCTATTCTTTGGAAACTTTGCTGTGAAAATAAGGATGAGGATATGGTGAAGGAGGCACTTCAAGTAGGAGCTTTTCAGAAGGTTCTGGTTTTGTTGCAAGTTGGGTGTGAAGATAAGACGAAGGGAAAAGCAACTGATTTGTTGAAGTTGCTGAATGCTCATAAGAACTCTGTGGAATGTGTTGATTCGTCTTTGGATAATTTGAAGTACCTTAAGAAGCCCTTTTGA 1320 0.4598 MVLSWSKRRVFRRGHKGKDLTGAADLDVEFVVPTHFRCPITLDLMTDPVTLPTGITYDRDSIEKWLESGNRTCPVTNQPLTTFDIIPNHTIRRMIQEWCVQNRSYGIERIPTPRIPVTHYEVSEICSKIMSATQRGDHTKCQQLVHKIKIWGKESERNKKCILQNGAAATSLANAFSSFSNISIEKYIGLLEEILGILTWILPKGQESCYMLSSESSLRCMVWFMNSKDLSSRQNAALVMKQVPIEPLPKAEGVIEALVKMIKEPVGPSATKASLKVIFQMVSSSNMENKEKVIKRCVELGLVNLLVEALVDGDRGICERALGILDRVCDYKEGKEVGKANVLTLPLVVKKILRVSGLASEFGVAILWKLCCENKDEDMVKEALQVGAFQKVLVLLQVGCEDKTKGKATDLLKLLNAHKNSVECVDSSLDNLKYLKKPF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1303 439 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Mibi05g1303 439 SUPERFAMILY ARM repeat 153 402 IPR016024 -
Mibi05g1303 439 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Mibi05g1303 439 SUPERFAMILY RING/U-box 31 108 - -
Mibi05g1303 439 CDD RING-Ubox_PUB 36 78 IPR045210 -
Mibi05g1303 439 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Mibi05g1303 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 109 IPR013083 -
Mibi05g1303 439 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Mibi05g1303 439 Gene3D - 125 431 IPR011989 -
Mibi05g1303 439 PANTHER WDSAM1 PROTEIN 29 421 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1303 Mibi-ChrMibi05 15689109 15690428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1303 29 439 U-box Gene Family AT5G37490 47.368 6.76e-121 357