Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1288 ATGACAATGGCTGACTCCGACTCCTTCTCTGCATTCCCATTTGATAGAGCCGCAATTGTATCTATAAAGAAAGGCGCTTACTTACTTAAGTGTGGGCGTAGAGGAAAGCCCAAGCTCTGCCTTTTTAGACTCTCTCCAGATGAGAAAACTTTGATTTGGTCTTCTGGGCAAAAAGAAAAGCATTTGCAACTGAGTGAAGTTGCAAGAATTGTTCAAGAGCAGGGAAATATAAGGTCCCAGAGACAAGGTCAACCTGGAAAGGATTGCCATTCATTTTCACTGATCTATGCAAATGGCGAACGCTCACTTGATTTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTAGCTGGATTAAGAGCTGTGATATCTAGGCCTCAGCGTCCAAGATCCTTAAGTAAATTAAGGACCCGTAAAGGAGTACAGAGTTGTGTAAATAGTCCAGCTGGGATCTTTCGGAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGTTGAATTTGCTCAGGTACACAGCGTACAAGCGAGTCCTAATTTATCACTTTCAGAAAGGTGCTTTTCTGAGGGCCTATCAGATGCATCCGATAGTGTTTACTCGTTAGAGTCTTTCCCATACAATTCTCGGAGCATAATGGATGTTGCAGTAACAGGTTCTGCATATGTAGATCCAGATTTTCTCAATAAAAATGGCTCAATATACTCTGATACAGAGTATGAGAAGAATTCATCCAATAGGCGTCGGGCTCCTCCTACTTCTCCTCATGTAGGAAACAAAAATATATTGAAGGATGTCATGGTATGGGGTGAAGGGATTGCAGGAGGTGGTAATAGTACATTGCCAAGGTTACTGGAATCTACAGTGATGCTAGATGTACAAAATATAGGTTTAGGAGGAAAGCACGCTGTTCTAGTTACAAAACAAGGGGAAGTGTTCAGCTGGGGTCAAGGGAAAGGTGGAAGGCTGGGGCAGAAAATCGACATCGATGTTAGCTCTCCCAAAATTGTCGATTCTCTTGATGAAATCCGCGTAAAATCTGTTGCCTGTGGTGAGTATCATACGTGTGCTTTGACAGACTCTGGTGTGGTATATACATGGGGAAATGATGGTTGTTGTACAGATTCTGTAGGTTATGAGAATAGTAGAAGTCAGTGGATACCTCATAAATTTTTGGGACCTTTAGATGGTATTTGTATATCTAGTATTGCTTGTGGGGAATGGCATACTGCGATTGTCTCTAGCTGCGGAAGACTATTTACATATGGTGATGGTACTTTTGGAGTTCTGGGGCATGGAAATCTTCAGAGCATTTCTCAACCAAAAGAAGTTGAGTCTCTTAAGGGTAAGAGAGTGAGGTCTGTTGCTTGTGGAACATGGCACATGGCAGCAATTGTGGAAATCGTGACTGCCCGTAGTAGATACAGTACTTCTTGTAAGCTGTTTACCTGGGGCGATGGAGATGGTGGCCGTCTTGGTCATGCTGATAATGGAAGGAAGCTTTTTCCAGCATGTGTTACACAACTTGTGGACTATGAATTTGTTCAAGTATCTTGTGGGAGAATGTTGACTGTTGCACTTACTAATCTGGGTAAAGTTTTTACCATAGGAGGTAAGATGCATGGACAGCTAGGAAACTCTCACACCAAGGATAAGACCGCGACCCTTGTAGAAGGACACTTGAAACAGGAATTTGTTAAGCAGATATCATGTGGTTCATATCATGTGGCCGTGTTGACATCTGCAGGCAGTGTCTATACATGGGGCCAAGGAACACATGGGCAGTTAGGGTTGGGCGATACTAAAGACCGATCCTCTCCTTCTTTTGTTGAGGCTCTAAAAGATAGGCAGATAGAGAGTATTGCATGTGGGTCATGCTTCACAGCTGCAATTTGCTCACACAAACCTGTTTCTATTGCTGAGCAATCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAGGCATAACTGCTATAATTGTGGTCTTCTCTTTTGCAGTTCATGTAGCACTAATAAAGTTACAAATGCTTCTCTAGCACCGAGTAGGAACAAGGCTTTTCGGGTTTGTGATCAGTGCTTTCTTAAGTGCCAAGGAATTGCTCACTCACCTAAGGTATCAAAGTTGCAAAATTATAACACCATGCAGCAACAGCGCCGCAATAGATTTCCTGATCTGACAGAAGATGAAGGGGAAACAGCAGGGTCACCTGGTCCTCTTTCATCTTTCAGCCAATCATGCTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAATCAACAAGAACGCCAGAAGCATGTAGAAAACTTTTCTTCAGTGTTGGGTGGGGTGCCGCAATGGGGAAAAGTTTCCTGCCCTGATTTATTTAAAACAAATTGTACAGAAAATTCTTTCATGCATATTCCTTCATCGAAAATTAAGTTAGCTTCTTTGAATCCTTTGAGACTAGAATCTACAGTATCCAGGATCCCTAATGCAGAGAAAGATATGCCGAAGTCTGAGAAAGTGCTTGTACAAGAAGTTCAGATGCTCAGAGCTATGACTGGGAAGCTTGAAGAGCAATGTCAGCTCCAAAAATGTATGATACAAGAATGTCAACAAAAGATTGAGAGGAGTAAGTCTCTGGCCAAGGAGGAAGCTGCTAAATACAGGGCAGCAAAAGAGGTCATAAAAGTTTTGACATCAAAACTTCAAACAAAATCAGAAAATGACTATGCTGTACAAGAAGGAAAGGTTGGGGTCAACGAATGCATGCCTTATCTTTCGGATGTTTATACTCCGAAAGGCTGCAACTTTGACACTCAATCTGATTCTCCTGCAGTATTCTCTGACAAATTAAGATCCAAATTTGGGATGAGAAGGAAATTCCTCCAAAGAGGTAGATCTAGGGAGGATTCTCAAGTCACTGAAGTGCAATTCCAGCAAGATGGTAACAATGGATCAAACGATGAATGGATAGAACAGTATGAACCCGGTGTGTACATCACTCTCACTTCCTTACCATGTGGAGAACTTGGCCTTAAAAGAGTGAGATTCAGCCGGAAACATTTCTCGGAGAAAGAAGCAGAGGAGTGGTGGGAAGAGAATCAAGCAAGAGTGTGTGGTGATTATGGGATCGAAGGATACACTAACAACAGCCAAACTCAAGTGTAA 3165 0.4246 MTMADSDSFSAFPFDRAAIVSIKKGAYLLKCGRRGKPKLCLFRLSPDEKTLIWSSGQKEKHLQLSEVARIVQEQGNIRSQRQGQPGKDCHSFSLIYANGERSLDLICKDKAQATSWLAGLRAVISRPQRPRSLSKLRTRKGVQSCVNSPAGIFRRKKNLGLLEDTVEFAQVHSVQASPNLSLSERCFSEGLSDASDSVYSLESFPYNSRSIMDVAVTGSAYVDPDFLNKNGSIYSDTEYEKNSSNRRRAPPTSPHVGNKNILKDVMVWGEGIAGGGNSTLPRLLESTVMLDVQNIGLGGKHAVLVTKQGEVFSWGQGKGGRLGQKIDIDVSSPKIVDSLDEIRVKSVACGEYHTCALTDSGVVYTWGNDGCCTDSVGYENSRSQWIPHKFLGPLDGICISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNLQSISQPKEVESLKGKRVRSVACGTWHMAAIVEIVTARSRYSTSCKLFTWGDGDGGRLGHADNGRKLFPACVTQLVDYEFVQVSCGRMLTVALTNLGKVFTIGGKMHGQLGNSHTKDKTATLVEGHLKQEFVKQISCGSYHVAVLTSAGSVYTWGQGTHGQLGLGDTKDRSSPSFVEALKDRQIESIACGSCFTAAICSHKPVSIAEQSACSSCELPFGFRRKRHNCYNCGLLFCSSCSTNKVTNASLAPSRNKAFRVCDQCFLKCQGIAHSPKVSKLQNYNTMQQQRRNRFPDLTEDEGETAGSPGPLSSFSQSCYRKSMPSGRKDWKNQQERQKHVENFSSVLGGVPQWGKVSCPDLFKTNCTENSFMHIPSSKIKLASLNPLRLESTVSRIPNAEKDMPKSEKVLVQEVQMLRAMTGKLEEQCQLQKCMIQECQQKIERSKSLAKEEAAKYRAAKEVIKVLTSKLQTKSENDYAVQEGKVGVNECMPYLSDVYTPKGCNFDTQSDSPAVFSDKLRSKFGMRRKFLQRGRSREDSQVTEVQFQQDGNNGSNDEWIEQYEPGVYITLTSLPCGELGLKRVRFSRKHFSEKEAEEWWEENQARVCGDYGIEGYTNNSQTQV 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1288 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Mibi05g1288 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Mibi05g1288 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Mibi05g1288 1054 MobiDBLite consensus disorder prediction 719 768 - -
Mibi05g1288 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Mibi05g1288 1054 Pfam Transcription factor regulating root and shoot growth via Pin3 987 1041 IPR013591 -
Mibi05g1288 1054 SUPERFAMILY PH domain-like 18 124 - -
Mibi05g1288 1054 Gene3D - 15 131 IPR011993 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 292 305 IPR000408 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Mibi05g1288 1054 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Mibi05g1288 1054 Gene3D - 471 645 IPR009091 -
Mibi05g1288 1054 Gene3D - 205 470 IPR009091 -
Mibi05g1288 1054 Pfam FYVE zinc finger 639 699 IPR000306 GO:0046872
Mibi05g1288 1054 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 699 IPR013083 -
Mibi05g1288 1054 Pfam Pleckstrin homology domain 22 122 IPR001849 -
Mibi05g1288 1054 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 59 902 - -
Mibi05g1288 1054 SMART fyve_4 632 701 IPR000306 GO:0046872
Mibi05g1288 1054 MobiDBLite consensus disorder prediction 237 256 - -
Mibi05g1288 1054 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Mibi05g1288 1054 SUPERFAMILY RCC1/BLIP-II 264 634 IPR009091 -
Mibi05g1288 1054 CDD PH_PLC_plant-like 17 125 - -
Mibi05g1288 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Mibi05g1288 1054 Coils Coil 866 886 - -
Mibi05g1288 1054 ProSiteProfiles BRX domain profile. 987 1042 IPR013591 -
Mibi05g1288 1054 SMART PH_update 22 127 IPR001849 -
Mibi05g1288 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 530 578 IPR000408 -
Mibi05g1288 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 480 526 IPR000408 -
Mibi05g1288 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 416 464 IPR000408 -
Mibi05g1288 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 582 630 IPR000408 -
Mibi05g1288 1054 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Mibi05g1288 1054 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Mibi05g1288 1054 SUPERFAMILY FYVE/PHD zinc finger 639 711 IPR011011 -
Mibi05g1288 1054 MobiDBLite consensus disorder prediction 739 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1288 Mibi-ChrMibi05 15502993 15509000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1288 935 1046 Major Intrinsic Protein MIP AT1G31880 34.513 1.26e-11 65.9