Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1265 ATGGAGTCCGTTCTTAAGAAATACTTTGGGTTTTCCGAGTTCCGCCCGTATCAGAAGGATGTGATAGAGAAAATATTGGAAAAAAGGGACTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCTTTGTGCTATCAGGTACCTCCATTGGTTGCTAAAAAGACTGGGATAGTTGTTAGCCCTCTTATTTCATTAATGCAAGACCAGGTCATGGCTTTGAAACAACGGGGTATCAGAGCTGAGTATCTTGGGAGCGCACAGACTGACCCCACTGTCCAGAGTAAAGCTGAGAATGGCCAATTTGATATTCTTTTCTTGACTCCTGAGAAAGCGTGCGTGATTCCTAACAGCTTCTGGTTGAACTTGCTGAAGGCAGGAATTTGTCTTTTTGCCGTTGACGAGGCACATTGCATATCAGAATGGGGCCATGATTTTAGGGTGGAATACAAGCAACTGGACAAGTTACGTGGTGTTCTATCAGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTCGACATTATCAGTTCCTTGAGGATGTGCAATCCTTATGTTTCGGTTGGTTCATTTGATCGCTCTAATCTTTTCTATGGTGTCAAGCCTTTTAACCATGGACAACAATTTGTAAATGAGCTTGTGCAAGAGATTTCCAAAAAAGTAGCTAGTGGTGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTAGAACAGATTTCCAAGTCACTGTCGGAAGCAGGTGTTGCTGCTGGCATGTATCATGGGCAAATGGGTAAAAAATCTCGTGAGGAATCTCATAGATTATTCGTTAGAGATGAACTGCGAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAAGTGATTCACTATGGATGCCCCAAGAGCCTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTATAGCTTCTGTTTGTTGCCTTTACTACACAAGAAGTGACTTTGCAAAGGGCAGCTTTTATTGTGGAGAATCACAATCGGCAAAACAAAGAAAAGCTGTCATGGAGTCATTAATGGCTGCTGAACGCTATTGCTTGCTGACAACTTGCCGAAGAAAGTTCTTGCTTGAATACTTTGGACAAAATGTTTCAGCTGATAGATGTGGAAATTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACATGTCAACAGAAGTATTTCTTCTACTGGCTTGCATTCAATCATGCAGGGGGAAATGGGGCCTGAACATGCCCATTGACATTCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCTCTTCATGGTCTTGGGAAAGCTCACCCATCAAATTGGTGGAAAGCACTGGGACATCAACTAATTTCTCATGGTTATTTGAAGGAGACTGTTAATGACATGTACAGAACTGTGAGTGTCAGTTCAAAAGGAGAGCAATTTCTGGTCTCTTCTACACCGGATTATCAACCACCCATAGTTCTGTCAGTAACTGCTGAAATGCTCGATGAGGAGGAAAATAGATCTGCCCCTGAAGAATTCCAAAGTTTAGCCACTTCAGATACTGAAGGTTTTTCAGAGGCTGAGGGGCAACTCTACCAAATGCTTTTGGAAGAGAGAATGAAACTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTAACAAGACCATCTACAAAAGCAAGGCTAGCAAACATCGATGGTGTGAATCAGCACCTGGTAACGAAATATGGAGATCATTTTCTTCAAGTTATTCAACAACTGTCGCAAGGACTAGACCTTTCACTGGATGGGGAAGCAAACTTGCAAGCTCCTGCAGTAAGGAAAGTGTCCACTGTTAGTCTAACCAATGAATCAAAGAAGTTGGGGCCTGCAAAGTTTGAGGCCTGGAAAATGTGGCAGGAAGATGGTCTTTCTATTCAGATGATTGCTAACTATCCAGGTAGATCAGCTCCTATAAAAGAACAGACTGTCACTGATTATCTGCTGGAAGCTGCCCGTGAAGGATTGCCTTTTGATTGGAATAGATTCCGTGAGATGGTTGGACTGACACCTGAAGTCGTCTCGGAAATTCAGGGTGCAATTCTAAAGGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGACGTGAGCTATGTACAGATCAAGAGTTATTTGGTAATGCAAAGCATTGGAATATCTCTTGAAGACACTCAGCATAGGAGCAACCAAGCAGAGAAAGATGGTCAATTCCAGAAGGAGTCGTCAGATTTATTGCAGAATCCATTAGATACATGCAACATGGAAGAAAAAAGTGGGGACATCGACATGTCTCCAAAGAGTCCGATGAAAAAATGCGACCCAAATATGGACGAGGAATCAACTCAACCTACCAATGGTTGCCAGGTACATATTCTTCCATTAGTCTGTGAGAAGGAGTTGACTAACAAACGACAAAAAGTCAGTGAACCAAATGAAGAAAATCCTATCAAATTGAAGGCAACGGAGAGTTCTGTAGTCGAGTGGCTGAAGAACCATGAAGGGGCTACATTAAATGATATTCTGGAGAACTTCAATGGATCCAGTAAAGATTCTGTGGTGGAATTACTGAATTGCCTTGAGGGTGAGTTTTTGATCTATAAGAAAAATAACATGTACAGGCTTATGTGA 2739 0.4231 MESVLKKYFGFSEFRPYQKDVIEKILEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTVQSKAENGQFDILFLTPEKACVIPNSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLRMCNPYVSVGSFDRSNLFYGVKPFNHGQQFVNELVQEISKKVASGGSTIIYCTTVKDVEQISKSLSEAGVAAGMYHGQMGKKSREESHRLFVRDELRVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCCLYYTRSDFAKGSFYCGESQSAKQRKAVMESLMAAERYCLLTTCRRKFLLEYFGQNVSADRCGNCDNCIVSKKQRDMSTEVFLLLACIQSCRGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKAHPSNWWKALGHQLISHGYLKETVNDMYRTVSVSSKGEQFLVSSTPDYQPPIVLSVTAEMLDEEENRSAPEEFQSLATSDTEGFSEAEGQLYQMLLEERMKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTKYGDHFLQVIQQLSQGLDLSLDGEANLQAPAVRKVSTVSLTNESKKLGPAKFEAWKMWQEDGLSIQMIANYPGRSAPIKEQTVTDYLLEAAREGLPFDWNRFREMVGLTPEVVSEIQGAILKVGSTEKLKPIKNELPEDVSYVQIKSYLVMQSIGISLEDTQHRSNQAEKDGQFQKESSDLLQNPLDTCNMEEKSGDIDMSPKSPMKKCDPNMDEESTQPTNGCQVHILPLVCEKELTNKRQKVSEPNEENPIKLKATESSVVEWLKNHEGATLNDILENFNGSSKDSVVELLNCLEGEFLIYKKNNMYRLM 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1265 912 FunFam ATP-dependent DNA helicase 536 626 - -
Mibi05g1265 912 Gene3D - 400 524 IPR036388 -
Mibi05g1265 912 SMART hrdc7 540 620 IPR002121 GO:0003676
Mibi05g1265 912 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mibi05g1265 912 MobiDBLite consensus disorder prediction 793 814 - -
Mibi05g1265 912 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Mibi05g1265 912 Pfam RecQ zinc-binding 335 396 IPR032284 -
Mibi05g1265 912 FunFam ATP-dependent DNA helicase 1 195 - -
Mibi05g1265 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 683 - -
Mibi05g1265 912 Gene3D HRDC domain 539 618 IPR044876 -
Mibi05g1265 912 SMART ultradead3 10 205 IPR014001 -
Mibi05g1265 912 FunFam ATP-dependent DNA helicase 197 398 - -
Mibi05g1265 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Mibi05g1265 912 Pfam Helix-turn-helix domain 653 748 IPR029491 -
Mibi05g1265 912 Gene3D - 197 399 IPR027417 -
Mibi05g1265 912 CDD DEXHc_RecQ 2 196 - -
Mibi05g1265 912 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Mibi05g1265 912 Gene3D - 1 195 IPR027417 -
Mibi05g1265 912 SMART helicmild6 242 323 IPR001650 -
Mibi05g1265 912 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Mibi05g1265 912 Pfam Helicase conserved C-terminal domain 216 322 IPR001650 -
Mibi05g1265 912 Pfam RQC domain 400 496 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mibi05g1265 912 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 3 456 IPR004589 GO:0004386|GO:0006310
Mibi05g1265 912 FunFam ATP-dependent DNA helicase 399 523 - -
Mibi05g1265 912 MobiDBLite consensus disorder prediction 793 821 - -
Mibi05g1265 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 364 IPR001650 -
Mibi05g1265 912 CDD SF2_C_RecQ 197 332 - -
Mibi05g1265 912 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Mibi05g1265 912 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Mibi05g1265 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1265 Mibi-ChrMibi05 15214658 15222960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1265 232 339 Eukaryotic Initiation Factors Gene Family AT3G19760 29.630 1.27e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1265 05 15214658 15222960 Mibi05g1265 05 15214658 15222960 ECH