Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1247 ATGTCCCAACCTAGACTCCTCCGAATCATACTCACTGATCACGATGCCACTGATTCTGACTCTGATTCAGATTCCGACTCTTCCCTCCATCATACTTCCAGAACCAAACGCCTAATCACCCACATCACCCTCGATCTTCCCTCTTCTGATTCCCCTTCTTCCTCTTCTCCGGCGAAACCCGACCCGACCCGACTCAGACGACCCGGAATTCACTCCCCCGCCCGCCGCCACAAGAAGTTCAGGGGGGTTCGTCAGAGACCATGGGGTCGTTGGGCCGCCGAGATCCGCGACCCGACCCGAGGAAAACGGGTCTGGCTCGGAACATTCGACACGGCCGAGGAAGCCGCCTCTGAGTACGACAGGGCTGCTCTCAAAATCAAGGGCTCTAACGCCGTCACCAACTTCCCTAGCCCCGTCGTAACGGAGGACCCCACGGCGGCCATGGAGGGAAGTCCCAGTACTGAAGGGACGGTGGTTTCCTTTTCCGACACGGCGGCGTCGCCTACTTCTGTGCTTCCGTACGACGGGGATCCGACGGCGTTTGACGATTTCCGTTATGTGGATGCGTTTGGGTTTGACATAGATGGGCCGTTATGTTTGCCGGACGTTAACTTGATGCTGTCGAGTCAACCGTTTAGGAAGGAGGAGTTCGGCGAGTTTGACGTTGATGACTTCTTGACGTGGCCGAACTAA 693 0.5685 MSQPRLLRIILTDHDATDSDSDSDSDSSLHHTSRTKRLITHITLDLPSSDSPSSSSPAKPDPTRLRRPGIHSPARRHKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTFDTAEEAASEYDRAALKIKGSNAVTNFPSPVVTEDPTAAMEGSPSTEGTVVSFSDTAASPTSVLPYDGDPTAFDDFRYVDAFGFDIDGPLCLPDVNLMLSSQPFRKEEFGEFDVDDFLTWPN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1247 230 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Mibi05g1247 230 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
Mibi05g1247 230 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Mibi05g1247 230 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Mibi05g1247 230 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Mibi05g1247 230 PIRSF PTI6 1 230 IPR017392 GO:0003700
Mibi05g1247 230 MobiDBLite consensus disorder prediction 69 83 - -
Mibi05g1247 230 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Mibi05g1247 230 MobiDBLite consensus disorder prediction 1 83 - -
Mibi05g1247 230 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Mibi05g1247 230 MobiDBLite consensus disorder prediction 11 33 - -
Mibi05g1247 230 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Mibi05g1247 230 MobiDBLite consensus disorder prediction 42 60 - -
Mibi05g1247 230 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Mibi05g1247 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1247 Mibi-ChrMibi05 15043214 15043906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1247 1 180 AP2-EREBP Transcription Factor Family AT4G11140 43.011 3.33e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi05g1247 AP2 9.1e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1247 05 15043214 15043906 Mibi08g0734 08 15859636 15860424 CCT
Mibi05g1247 05 15043214 15043906 Mibi05g1247 05 15043214 15043906 ECH