LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g1246	ATGTGCACTAATGGTCCTGCTTGTTTCTCTTCCTTGTCTCATGCCAATCCTCTGATTCACCAAGTGCTAACTATATCTTACTGGTGTGTTGCAGCAGTCATGGCAGATGAAACACATAATGGTCTTGTGGCAAACATTGCAAATGAAAAACGTAATGATATGAAGGAGGGTGGTGAAGAAATTCCTCTGTCTGACCCCTTGTTTAAGAAGAGAAAGAACATTGTGATGCAAGATGTTGACGGTGGTTGCTCTCCTAAGGAGCTCCAACTGCAGAATGATGCAGCTAACTCTTCTCAGGTGTGTAAAACAAGGCAGAAACCCCGACAAAAGCTCGTCAGAATTATAGTAACTGACCCTGATGCTACTGATACTGACTCTTGCACCAGTGATGCTCCACGAGGAGGGGAGAGGCAAGTGACACAGATTTGCATTGACATTCCCTCAGACACTGCTTCTTCTTTTATATCCACTCCGTTTCCCTCCAAGGAAGACTTAACCCACATTGAGAAAACAAAGAAATCTTCCAACAACAATGACTCATCTGGTGGCCCCAAGAAGTACAGGGGTGTTCGTCGGAGGAAATGGGGTCGGTGGGCTGCTGAAATCCGTGACCCGGCTAACCGAAAAAGACTCTGGCTTGGGACCTTTGACACTGCTGAGGATGCTGCGGTAGAGTATGACAAGGCTGCTGTGAGGCTGAGGGGTAGTAATGCCATAACTAACTTCCCTCAATCTGTGACAGAGGAGGTGAAGCCTGCCACCATCCGCGACAACTCAAGCACTGATAATAGTTTTACCTCGTCGGGTGCACTGGCATCCCCAAACTCTGTGCTGTCTTAG	840	0.4738	MCTNGPACFSSLSHANPLIHQVLTISYWCVAAVMADETHNGLVANIANEKRNDMKEGGEEIPLSDPLFKKRKNIVMQDVDGGCSPKELQLQNDAANSSQVCKTRQKPRQKLVRIIVTDPDATDTDSCTSDAPRGGERQVTQICIDIPSDTASSFISTPFPSKEDLTHIEKTKKSSNNNDSSGGPKKYRGVRRRKWGRWAAEIRDPANRKRLWLGTFDTAEDAAVEYDKAAVRLRGSNAITNFPQSVTEEVKPATIRDNSSTDNSFTSSGALASPNSVLS	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g1246	279	CDD	AP2	185	245	IPR001471	GO:0003700\|GO:0006355
	Mibi05g1246	279	MobiDBLite	consensus disorder prediction	169	190	-	-
	Mibi05g1246	279	SUPERFAMILY	DNA-binding domain	186	245	IPR016177	GO:0003677
	Mibi05g1246	279	SMART	rav1_2	186	249	IPR001471	GO:0003700\|GO:0006355
	Mibi05g1246	279	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	108	278	-	-
	Mibi05g1246	279	MobiDBLite	consensus disorder prediction	251	279	-	-
	Mibi05g1246	279	Gene3D	AP2/ERF domain	185	245	IPR036955	GO:0003700\|GO:0006355
	Mibi05g1246	279	ProSiteProfiles	AP2/ERF domain profile.	186	243	IPR001471	GO:0003700\|GO:0006355
	Mibi05g1246	279	FunFam	Ethylene-responsive transcription factor 2	185	244	-	-
	Mibi05g1246	279	Pfam	AP2 domain	186	235	IPR001471	GO:0003700\|GO:0006355
	Mibi05g1246	279	PRINTS	Ethylene responsive element binding protein signature	209	225	IPR001471	GO:0003700\|GO:0006355
	Mibi05g1246	279	PRINTS	Ethylene responsive element binding protein signature	187	198	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g1246	Mibi-ChrMibi05	15022258	15023314	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g1246	97	278	AP2-EREBP Transcription Factor Family	AT4G27950	41.053	6.06e-32	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi05g1246		AP2	7.8e-13	CL0081