LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g1243	ATGTCTTATGTTCCTCCTCACCTCAGGAGCTCAACCTCTACCACTACTGTTGCTGCCAGAATCTCATCTCTCTCAAATGACTCCATCGATCACAGCAAGCTTGCCAATTCTCACTTCCACACATCTCTCACTCCTCCTTCATCTTCCTCCTTCGCCAATTCCTCTCGCCGTACCTCCGTTGCTCCTCATCTTTCTCGTACTCTCTCCGCCCCCGACCCTGTTTTCCCTCAATGGCATCCTTCTGAACGCGTTTCTCGCATGAACCCCGAACAGATTGATGAGGTTCGACTGCGGCTTAATCTCGACGTTTCAGTTGCATCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCCGACATGTGCTTGCACCAAAGTATCATGAAGGATATTGCTTATCATGAATACACCCGGCCAACTTCTATACAGGCACAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCGATTCGGCGTGGAGATGGTCCTTTGGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCCCAACAAATAGAAAAAGAGGTTAAAGCTTTCAGCAGATCACTTGAATCATTAAAAACTGCTATAGTTGTAGGTGGAACTAATATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATCTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGACATGGGTTTTGAGCCACAGATAAGAGAGGTCATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTATTTAGTGCAACTATGCCTGAGGAGATTGAAGCATTAGCGAAGGAGTACTTAACAAGTCCGGTGCAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAATGTTTGTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGACTCCTGGATATGCTTGTTGAGGAGGCATCACATGCTGAAAAAGCTAGTCGTCCATTTCCATTAACAATTGTATTTGTGGAGAGAAAGACAAGGTGTGATGAAATTGCTGAAGCGTTGGTAGCCCAAGGTTTATCTGCTGTTTCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGGCTCCACTAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCTCAGGAGTGTCACATGTCATCAATTTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGCAGAACTGGGCGTGCAGGATCAACAGGCCAGGCGACTTCTTTTTACACTGACCGTGATATGTTTCTTGTTGCAAATATAAGGAAGGCTATAGCTGATGCTGAGTCTGGAAATACTGTGGCTTTTGCAACTGGGAAGGTTGCTAGAAGAAAGGAGAAAGAGGCGGTAGCTGCCCAGAAAGAGGCAAAGATAGCATTGTCGAACAACTTGGCTTCGGGAACTGCCTCAATCGCTATTGAGGATAAGTATAGGTTCATGATTACAGCATCAAATATGAAAAGAGAGGGTGCGGCAGACAGTGCTTGGGATGATTAG	1689	0.4506	MSYVPPHLRSSTSTTTVAARISSLSNDSIDHSKLANSHFHTSLTPPSSSSFANSSRRTSVAPHLSRTLSAPDPVFPQWHPSERVSRMNPEQIDEVRLRLNLDVSVASDSLPAPAPIESFSDMCLHQSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPEEIEALAKEYLTSPVQVKVGKVSSPTANVCQTLVKVSENEKIDRLLDMLVEEASHAEKASRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVSGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAVAAQKEAKIALSNNLASGTASIAIEDKYRFMITASNMKREGAADSAWDD	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g1243	562	Pfam	Helicase conserved C-terminal domain	348	465	IPR001650	-
	Mibi05g1243	562	Coils	Coil	203	223	-	-
	Mibi05g1243	562	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	108	511	-	-
	Mibi05g1243	562	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	270	278	IPR000629	-
	Mibi05g1243	562	Gene3D	-	77	328	IPR027417	-
	Mibi05g1243	562	MobiDBLite	consensus disorder prediction	38	65	-	-
	Mibi05g1243	562	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	485	IPR027417	-
	Mibi05g1243	562	SMART	ultradead3	136	341	IPR014001	-
	Mibi05g1243	562	Pfam	DEAD/DEAH box helicase	141	312	IPR011545	GO:0003676\|GO:0005524
	Mibi05g1243	562	MobiDBLite	consensus disorder prediction	38	89	-	-
	Mibi05g1243	562	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	117	145	IPR014014	GO:0003724
	Mibi05g1243	562	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	348	506	IPR001650	-
	Mibi05g1243	562	CDD	DEADc	128	325	-	-
	Mibi05g1243	562	FunFam	probable ATP-dependent RNA helicase DDX17	77	327	-	-
	Mibi05g1243	562	Gene3D	-	330	524	IPR027417	-
	Mibi05g1243	562	SMART	helicmild6	384	465	IPR001650	-
	Mibi05g1243	562	CDD	SF2_C_DEAD	338	474	-	-
	Mibi05g1243	562	Coils	Coil	506	526	-	-
	Mibi05g1243	562	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	148	324	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g1243	Mibi-ChrMibi05	14987047	14998178	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g1243	117	478	Eukaryotic Initiation Factors Gene Family	AT3G13920	36.612	1.14e-69	228

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi05g1243	05	14987047	14998178	Mibi05g1243	05	14987047	14998178	ECH