Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1229 ATGGAGGTTGTTTTGGCTGCATCTTCTGTTGATGCTGATATTGGCTGCTGGGACCTTAAGTCAGGGGTTGAGGAGCTGCGCTATAAAACTTGTGCTTCCACACCTCATGGCCTCATTAGTGTGGGCAGTCGCTTCCTTGCATCTTCGCAGATCCGAGATTTCAAAGCTAATGCTGGTCTGGTTCTCTACTGGTCCTGGTCCAAGCCTCAAGTAGAAGTCAAGAGCTTTCCAGCTGAGCCAATCAGGCCTCTTGCTGCTAATCACCCAGGGACTTATATAGCTGGTGGTGGTCTATCGGGTGACATATATTTTTGGGAGGTTGAAACTGGCAGATTGCTCAAGAAGTGGTATGCTCATTATAGGGCTGTAACTTGCCTAGTATTTTCTGAGGATGATTCACTACTGATATCTGCTTCAGAAGATGGATGCGTGCGAGTTTGGTCCTTGTTCATGATATTTGATGATTGGAAAAGGCAGGAAGCAGGCCATTGTTATATGCATAGTTTTTCAGAGCACACCTTACGAGTAACGGATATTGTAATTGGTAATGGAGGCTGCAGCGCAATTATAATTTCTGCTGCAGAGGATATGACCTGTAAGGTTTGGAGCTTATCTAGAGGAACACTACTAAGAAATATAGTATTCCCTTCAGAAATTGATGCAATTGCATTGGATCCTTCTGAACATGTCTTTTATGCTGGCAGTAGAGATGGAAAAATATTTATTGCCGCTCTTAACACTGAAAGGATCTCTAGTCATAATCATGAGATGCATATCATCGGTTCATTCTCTAATCACGGCAAAGCAGTTACTTGCTTAACATATAGTGCCAGTGAGAATTTGTTGATCTCTGGATCAGAAGATGGAATGGTTCGGCTTTGGAATGCAAAAACTCACAATTTTGTCCGCATGTTCAAACATGCAAAAGGGCCAGTGAATAACATCCTGGTTGCTATGCAGCATGACTTATGTAAGCCTTTACAATCGTGTTCAAGAAAGCAGGGATCTTTATTACCACCTCCATTGGAAAAATATTCAAATTCAACAATAGGTGAAGATTCAGATGTTAAGACTATTGTTAGCCTCCACGATGGAAGGAGTGGTGTGGATATTTCATACATGTCTTCTCAGGCAATATTTAATCAAATCAAGGAATTTCAGAATTGTGGCTCCTCTGCTTCAGAAATGGAGATGGAGAGGCTAAAAGCAGATTGCAAGAGGTCTGTCCAGATGGTTGACCGATTTAAGAAAATGTATGAAGATTTGCAAGAGTTCTATGAAGATGACTTCTTGAAAAGTGGTCAAACAAAAACTTAA 1317 0.4146 MEVVLAASSVDADIGCWDLKSGVEELRYKTCASTPHGLISVGSRFLASSQIRDFKANAGLVLYWSWSKPQVEVKSFPAEPIRPLAANHPGTYIAGGGLSGDIYFWEVETGRLLKKWYAHYRAVTCLVFSEDDSLLISASEDGCVRVWSLFMIFDDWKRQEAGHCYMHSFSEHTLRVTDIVIGNGGCSAIIISAAEDMTCKVWSLSRGTLLRNIVFPSEIDAIALDPSEHVFYAGSRDGKIFIAALNTERISSHNHEMHIIGSFSNHGKAVTCLTYSASENLLISGSEDGMVRLWNAKTHNFVRMFKHAKGPVNNILVAMQHDLCKPLQSCSRKQGSLLPPPLEKYSNSTIGEDSDVKTIVSLHDGRSGVDISYMSSQAIFNQIKEFQNCGSSASEMEMERLKADCKRSVQMVDRFKKMYEDLQEFYEDDFLKSGQTKT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1229 438 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Mibi05g1229 438 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Mibi05g1229 438 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Mibi05g1229 438 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Mibi05g1229 438 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Mibi05g1229 438 SUPERFAMILY WD40 repeat-like 5 317 IPR036322 GO:0005515
Mibi05g1229 438 Gene3D - 1 214 IPR015943 GO:0005515
Mibi05g1229 438 PANTHER WD-REPEAT PROTEIN 18 2 429 IPR045227 -
Mibi05g1229 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Mibi05g1229 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Mibi05g1229 438 Gene3D - 215 324 IPR015943 GO:0005515
Mibi05g1229 438 SMART WD40_4 162 203 IPR001680 GO:0005515
Mibi05g1229 438 SMART WD40_4 109 148 IPR001680 GO:0005515
Mibi05g1229 438 SMART WD40_4 206 244 IPR001680 GO:0005515
Mibi05g1229 438 SMART WD40_4 256 295 IPR001680 GO:0005515
Mibi05g1229 438 SMART WD40_4 69 106 IPR001680 GO:0005515
Mibi05g1229 438 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Mibi05g1229 438 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Mibi05g1229 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Mibi05g1229 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Mibi05g1229 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1229 Mibi-ChrMibi05 14736733 14741594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1229 88 305 U-box Gene Family AT1G04510 22.973 1.70e-11 64.3