Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1205 ATGGGGTTATCCATATTTACAATCTATTTTTCTGTTACTGATGCAGGTGTTATGGAGATATCCTTGTTAAAGGTGCTTGTTAATGGCATATCCTCATTTTTGAACCTATCCTTTTCTGGGAATGGAAACTCAGAATTTGTTTCAAAGTATTACCAAAAGGTGGAGGGGACACTTAAGTTGCTCAAGCCTATAGCTGATGCTTTGGTTAATTCTGAAATAGCTTCTGATGAAGTGCTTAACAAGGCGTTTGAAGCAGAGGGTCGGGCTGTTGATGAGTTGAGGGAGCTTTTTGGGAACTGGCACCCATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAGTCCTTGCTATCTAGGATTCGGACTTCAGCATTCGATGTTTTCCAGCAGCTGAAGGCTTCTCATCTAAGTCTCCCAGATGAACTGAACACTCTGCAAGTTGAGGTGATTTATGTCATTAATAATTTCTTTTCTGATAAAATCCCTCCTTTTAGTACAGTTTACATGTTTTTATTTGGATACAACTTAATTACAATGTCTACTATCAACTTAAAATTGCAGCATTGTGTTGAGAAACTTAAGCTTTTAGGACATGAGGAGGAAATCTCATCAGTCATTAAAGACGCTATTAGCGAACAAATGGAAGGTGCAGGACCTAGTTCAGAGGATTTAGCAAACATTGCCGAGAGCCTGAGCCTGAGTTCAAATCAAGAGATTCTGATTGAGGCTGTAGCCCTAGAAAAGTTGAAGGAGATTGCTGAACAAGCTGAGAAAACTGCTGAAGCTGAGTATTTTGATCAAATGATTACTCTTGTAACTCGTATGCATGAGCGTCTTGTTGCGCTTAAGCAAGCCCAGAGCTCTAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTAATGATGGATCCGGTAATTGTGGCTTCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATTTGGGACTTACTGTCTGTCCGAAGACACGTCAGACCTTGGCTCACGCCAATTTAATACCTAACTACACTGTAAAGGCGTTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGCTGATCCCGTAGTGTCCACAAACTTAAATCAAGCATCTTTTCTTCATGGGTATATGGAATCTGGTGCAACCAGGGAATCACCGGTTTTAGCTCATTCTAGGACCAACCAACCATCCTCCCCAGAGGCAGTTCGCTCCCATTCTTTCAGTTCACCAAGTAAGAGCTTAACTTCTGGAGCAACCCATAGAGAGGGAACATCACCATTTCATCCTCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGCTAATGGACAGTGTTTGGATTTTGCAAGAACATCACCTGCAGGTTCTGATGATAGGTGTGCTAGCTCAGATGAAAGGAGTGAGGATTCAGTTGTCCAACCATCAATGTCTCAGTCTATAACTGAAACTTCCAATGCCCATAGCTCTGAACAATCCCAAGGCCATGTTAGAGCAGCTTCTGATTCCAGTGCACTTGCCAGTGTTCAAGGAGCACAAGGCAATGGTCACAGTACTCATCTGTCAACCACTCTTGTCAACGGTAAGGATGCTTCTGTGGGGGTAAATTCTGGGGTAGATGCTAATGGCACTCCCCAGAGAGAACCTGAGATCTCAACCCGTGTGGAGACAAGGCCACGAAACCCAAGTATGTGGCGCCGGCCATCGGAAAGATTTTTTCCTAGGGTGGTGCCCACTGCTGGTGAAACAAGAGCCGATCTTTCTGGTATTGAAGTCCAGGTTAAGAGTTTGGTTGACGACTTGAAGAGCACTTCTGTTGATACTCAAAGGGAGGCAACATCAAAGCTCCGCCTTCTCGCTAAGCACAATATGGATAATCGACTTGTGATTGCAAACTGTGGAGCCATTGAGTTGTTGGTTGACTTACTTAACTCAAATGACACGACAATCCAGGAAAATTCTGTTACAGCACTTCTTAACTTATCAATAAATGATAACAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTAATCCATGTGCTTGAGACAGGAAGCCCCGAAGCGAAGGAGAATTCAGCTGCCACTCTCTTCAGCTTATCAGTGATTGAAGAAAACAAGATCAAGATAGGGAGGTCAGGGGCAATTGGGCCTCTGGTTGATTTATTAGGTAATGGAACTCCAAGAGGAAAGAAAGATGCTGCCACTGCTTTGTTTAACTTGTCAATTTATCATGAAAACAAGGGCCGCATTGTGCAAGCTGGAGCCGTGAAGCACCTTGTGGAATTAATGGATCCGGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAACCTTGCCACAATTCAAGAAGGAAGAACCGCCATTGGCCTGGAAGGCGGGATCCCTGTTTTAGTTGAGGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCCGCAGCTCTACTACATCTTTGCTCAAACAATCCTCGATATTTGAGTACGGTGCTTCAGGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAACCAAATTAGAAGTCAAAGAAATGCTGGGAGAGGCTGA 2652 0.4393 MGLSIFTIYFSVTDAGVMEISLLKVLVNGISSFLNLSFSGNGNSEFVSKYYQKVEGTLKLLKPIADALVNSEIASDEVLNKAFEAEGRAVDELRELFGNWHPLSSKVYFVMQVESLLSRIRTSAFDVFQQLKASHLSLPDELNTLQVEVIYVINNFFSDKIPPFSTVYMFLFGYNLITMSTINLKLQHCVEKLKLLGHEEEISSVIKDAISEQMEGAGPSSEDLANIAESLSLSSNQEILIEAVALEKLKEIAEQAEKTAEAEYFDQMITLVTRMHERLVALKQAQSSSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHANLIPNYTVKALIANWCESNNVKPADPVVSTNLNQASFLHGYMESGATRESPVLAHSRTNQPSSPEAVRSHSFSSPSKSLTSGATHREGTSPFHPRSTSEGSLSGMANGQCLDFARTSPAGSDDRCASSDERSEDSVVQPSMSQSITETSNAHSSEQSQGHVRAASDSSALASVQGAQGNGHSTHLSTTLVNGKDASVGVNSGVDANGTPQREPEISTRVETRPRNPSMWRRPSERFFPRVVPTAGETRADLSGIEVQVKSLVDDLKSTSVDTQREATSKLRLLAKHNMDNRLVIANCGAIELLVDLLNSNDTTIQENSVTALLNLSINDNNKSAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGLEGGIPVLVEVVELGSARGKENAAAALLHLCSNNPRYLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQIRSQRNAGRG 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1205 883 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Mibi05g1205 883 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Mibi05g1205 883 Coils Coil 243 263 - -
Mibi05g1205 883 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 684 IPR000225 GO:0005515
Mibi05g1205 883 Gene3D - 591 880 IPR011989 -
Mibi05g1205 883 SUPERFAMILY RING/U-box 283 368 - -
Mibi05g1205 883 MobiDBLite consensus disorder prediction 397 572 - -
Mibi05g1205 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 370 IPR013083 -
Mibi05g1205 883 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 765 806 IPR000225 GO:0005515
Mibi05g1205 883 MobiDBLite consensus disorder prediction 397 449 - -
Mibi05g1205 883 FunFam RING-type E3 ubiquitin transferase 586 880 - -
Mibi05g1205 883 MobiDBLite consensus disorder prediction 476 558 - -
Mibi05g1205 883 PANTHER U BOX DOMAIN-CONTAINING 48 873 - -
Mibi05g1205 883 SUPERFAMILY ARM repeat 602 874 IPR016024 -
Mibi05g1205 883 Pfam Armadillo/beta-catenin-like repeat 633 670 IPR000225 GO:0005515
Mibi05g1205 883 Pfam Armadillo/beta-catenin-like repeat 715 752 IPR000225 GO:0005515
Mibi05g1205 883 Pfam Armadillo/beta-catenin-like repeat 672 711 IPR000225 GO:0005515
Mibi05g1205 883 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Mibi05g1205 883 CDD RING-Ubox_PUB 297 339 IPR045210 -
Mibi05g1205 883 FunFam RING-type E3 ubiquitin transferase 292 367 - -
Mibi05g1205 883 SMART arm_5 794 834 IPR000225 GO:0005515
Mibi05g1205 883 SMART arm_5 672 712 IPR000225 GO:0005515
Mibi05g1205 883 SMART arm_5 754 793 IPR000225 GO:0005515
Mibi05g1205 883 SMART arm_5 835 876 IPR000225 GO:0005515
Mibi05g1205 883 SMART arm_5 713 753 IPR000225 GO:0005515
Mibi05g1205 883 SMART arm_5 631 671 IPR000225 GO:0005515
Mibi05g1205 883 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 766 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1205 Mibi-ChrMibi05 14382642 14386599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1205 252 883 U-box Gene Family AT2G23140 60.124 0.0 694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1205 05 14382642 14386599 Mibi08g0710 08 14644568 14647793 CCT