Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1155 ATGATCAGTCATGAGGGAGAGGATATTGGCCACCATACATCTCATCTCAACCTTCTCGCATTCTTCAATCTCAAAGCAACAAGAAAGGCAAGAGGGAAGAGGAAGCACTTGAAGAGGCTCAATGCTCCCAAACACTGGATGCTTGACAAGCTTGGTGGCGCTTTTGCCCCCAAGCCATCTCCTGGACCTCACAGGCTAAGGGAATGCTTACCCCTCATCCTTATCCTCCGAAACAAGCTTAAATATGCACTTACGTATCGTGAGGTCATTTTGATTCTCATGCAGCGACAAGTTCTTGTTGATGGAAAAGTCAGAACCGATCAGAAGTACCCTGCAGGCTTTATGGATGTTGTATCAATTCCAAAAACGAACGAGAACTTCAGACTCCTCTATGATGTCAAGGGTCGTTTTCGCCTGCGATCAATAACAGAGGACGAGGCAAAGGTGCAGTTTGGGAAAAGGGGAATTCCATTTCTGAACACGTACGATGGACGAACCATCAGATATCCTGACCCTCTTATCAAAGCAAACGACACCATAAAAATCGACCTAGACACCTACAAGATCACTGACTTCATAAAGTTTGAAGTTGGGAATGTGGCGATGGTGACAGGTGGGAGGAACAGGGGGCGAGTTGGGATCATAAAAAGGAGGGAGAAACATATGGGAACCTTCGACACCATCCATGTCCAAGATGCTGTGGGAAACGAATTCGCTACTCGCCTGGAAAACGTTTTCATTATTGGTCAGGGCTCAAAACCATGGGTCACTTTACCCAAGGGAAAGGGACTTAAGTTGAGTATCATTGAAGAAGCCAGGCTCAGGCGTGAGGCAGAAAGGGCTTCTTCAGCATAA 855 0.4655 MISHEGEDIGHHTSHLNLLAFFNLKATRKARGKRKHLKRLNAPKHWMLDKLGGAFAPKPSPGPHRLRECLPLILILRNKLKYALTYREVILILMQRQVLVDGKVRTDQKYPAGFMDVVSIPKTNENFRLLYDVKGRFRLRSITEDEAKVQFGKRGIPFLNTYDGRTIRYPDPLIKANDTIKIDLDTYKITDFIKFEVGNVAMVTGGRNRGRVGIIKRREKHMGTFDTIHVQDAVGNEFATRLENVFIIGQGSKPWVTLPKGKGLKLSIIEEARLRREAERASSA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1155 284 CDD KOW_RPS4 195 249 IPR041982 -
Mibi05g1155 284 Pfam Ribosomal family S4e 123 189 IPR013845 -
Mibi05g1155 284 Pfam KOW motif 197 230 IPR005824 -
Mibi05g1155 284 Gene3D - 147 192 IPR038237 -
Mibi05g1155 284 Pfam RS4NT (NUC023) domain 31 67 IPR013843 -
Mibi05g1155 284 ProSiteProfiles S4 RNA-binding domain profile. 70 133 - -
Mibi05g1155 284 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 30 273 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mibi05g1155 284 PIRSF RPS4a_RPS4e 29 261 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mibi05g1155 284 Pfam S4 domain 75 118 IPR002942 GO:0003723
Mibi05g1155 284 ProSitePatterns Ribosomal protein S4e signature. 36 50 IPR018199 -
Mibi05g1155 284 SMART kow_9 194 221 IPR005824 -
Mibi05g1155 284 FunFam 40S ribosomal protein S4 147 192 - -
Mibi05g1155 284 FunFam 40S ribosomal protein S4 195 265 - -
Mibi05g1155 284 Hamap 30S ribosomal protein S4e [rps4e]. 35 258 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mibi05g1155 284 SMART s4_6 70 134 IPR002942 GO:0003723
Mibi05g1155 284 FunFam 40S ribosomal protein S4 29 145 - -
Mibi05g1155 284 Gene3D - 195 265 IPR014722 -
Mibi05g1155 284 Gene3D - 29 145 IPR036986 GO:0003723
Mibi05g1155 284 CDD S4 79 140 - -
Mibi05g1155 284 Pfam 40S ribosomal protein S4 C-terminus 232 278 IPR032277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1155 Mibi-ChrMibi05 13998407 14001289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1155 30 282 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 75.479 4.48e-150 419