Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1118 ATGGCTGAATGGTTCTCTCTAGGTGGGAAACAAGGCCCACAAATTACCAAGCTAGAAGAAAAGGGAAAACAAGACAACACTAACACAAACACCAATTGTCTATTCTTGCTGAACGAGAAGGAGATCTACAACAACAACAGCAACAACAATAAAGGATTCGAGATATGGACACAGCCTTATCATCATCATCATCAAAACCAATCCTTGAGCAATTGCTTCTCTCTTGGGGTGGGTCCTAGTTGTGCAAACTTATTTGATGAGTCAACAAGGTTTGGATTGACGGTGATGAGGTCAGGGGCTTTAGGAAGTGGTATGAATTGTCAAGATTGTGGTAACCAAGCAAAGAAAGATTGTGCAAATCTTAGATGCAGAACTTGCTGTAGAAGCCGAGGGTTTCAGTGTCAAACTCATGTTAAAAGCACTTGGGTCCCTGCCGCCAAACGCCGTGAACGGCAGCACCATCAGCTTCAAGAACATCATCGACAACTTCCCGGCGACACCTCCAAACGTAGTCACAGAGAATCTCAACTTGCTCGCATTCCTTCACCTATCACCACCACAGGGTTGGAGCTGAGACCATTCCCTCATGAACTGAATTCACCAGCGGTGTTTCAATGTGTGAAAGTGAACACCATGGAGACACCAGAAGAGCAATACGCTTATCAAACTGCTGTTAACATTGGAGGTCATGTTTTCAAAGGCATCCTCTATGACCAAGGCCCTGATGCTCCTTATAATAACCCCGGCGGTGGTCGGACCTCCGCCACGGCGGCGACTGAATCTGATGATAATCAAAACCTTAATCTCATGACGGCGGCGTCAACCACCATGGCACTAGCTCCGGCCCCTTTTGATGCTTCAATGTATCCTAATGTCCCACTTAATACTTTCATGGCAGCTGGTACGCAATTCTTCCCACCATCAAGATCCTAA 933 0.462 MAEWFSLGGKQGPQITKLEEKGKQDNTNTNTNCLFLLNEKEIYNNNSNNNKGFEIWTQPYHHHHQNQSLSNCFSLGVGPSCANLFDESTRFGLTVMRSGALGSGMNCQDCGNQAKKDCANLRCRTCCRSRGFQCQTHVKSTWVPAAKRRERQHHQLQEHHRQLPGDTSKRSHRESQLARIPSPITTTGLELRPFPHELNSPAVFQCVKVNTMETPEEQYAYQTAVNIGGHVFKGILYDQGPDAPYNNPGGGRTSATAATESDDNQNLNLMTAASTTMALAPAPFDASMYPNVPLNTFMAAGTQFFPPSRS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1118 310 Pfam Domain of unknown function (DUF702) 104 242 - -
Mibi05g1118 310 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 194 241 IPR006511 -
Mibi05g1118 310 MobiDBLite consensus disorder prediction 148 188 - -
Mibi05g1118 310 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 278 IPR007818 GO:0003700|GO:0006355
Mibi05g1118 310 MobiDBLite consensus disorder prediction 148 176 - -
Mibi05g1118 310 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 106 148 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1118 Mibi-ChrMibi05 13556227 13557625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1118 1 309 C2H2 Transcription Factor Family AT1G19790 39.503 3.49e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mibi05g1118 DUF702 1.7e-58 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2576 08 43467170 43468525 Mibi05g1118 05 13556227 13557625 CCT
Mibi05g1118 05 13556227 13557625 Mibi05g1118 05 13556227 13557625 ECH