Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1078 ATGGTTAACTGGCGCCGCTTTCGCCATTTTTTATTACTTTCGTGTTGCGCATTCGAGTCCCTCCCTCTTCCCCTCTCTCTTCTTCCTTCCGCCTCCGTATGCGACCGTCTTTTGATTTCGATACATACCATGACGGAGCTGGAGAATCCAACTTCAATGGCAGTTTCTGCAGCTTCCGGAGAACTTCACAACGCGCCAGATGAACTTCCTCCACTGAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCCGAGGTGATTGCTTTATCGCCGAAAACACTTTTAGCGACGAATCGTTTTGTGTGCGAGATCTGCAATAAAGGATTTCAACGGGACCAAAACCTTCAACTTCATCGACGTGGTCACAATCTGCCATGGAAACTCCGGCAGCGAACCAGTAAGGATATTCGTAAGAGAGTCTACGTTTGTCCAGAGACTTCCTGTGTCCACCATAATCCGTCGAGGGCGTTAGGTGATCTCACCGGCATAAAAAAGCACTTCTGTAGAAAGCACGGCGAAAAGAAGTGGAAATGCGAACGGTGCTCCAAGAAATATGCCGTACAGTCTGATTGGAAGGCTCATATGAAGACTTGTGGAACTAGAGAGTACAAATGTGACTGTGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCACAGGGCTTTTTGTGATGCTTTGGCGGAAGAAAGCGCAAGAACTCGAACCCTAACCATTGGTGAAGGTTCAGAGGGGAATTCAAATGGGAAGGTTGCTATGGCTTCGCCGCCGCAGCCACCTTTAACGCCGTCGACGTCTGTGGTGTCTCCCGCTTTGTCCATTCAGAGCTCAGAAGTCTCGGAAAACCCAATCAGGTTGTCGCCGCCGTGTTCCAACGTAACGTGTTTACCGCCTGCAGCTACCGTCACAAATAGTACTCCGTCCAATTCTACCAGTGTTTTCGCCAGTATATTTGCATCCTCAAGTACTCCAACTTCATCGACACTTCCATCGTATTCCAATATGATGTCTAACTTGGCTCGATCAGAATGCCCAACCACCACCCCAACGTTGTCAGTGATAGAGCCCACATCTCTGTCTCTCTCAACATCCCTTTATCTCTCCAATAATGACTCATCCGTGTTTCCAGACCAGCGTGACCCTCGGCACTACACTGTTTCTCCTCAGCCTGCACTTTCCGCCACTGCATTACTCCAAAAGGCAGCTCAAATGGGTGCTGCTGCGTCCAATGCATCTTTGCTTCGAGGTTTAGGCCTAGCACAAAACGATGGTACCTCAACACAATGGAATAGCCGTGTAAAGACGGAGGATCACTCTTTACCTGATGATGGCCTTGTTCTTGGAATCCCTTCTGGTAATACTGGTTTCGCTGACTTGATAATGGGCTCGTCGTCGTCGCCTTTGCCGTTTGGGGGACAGCCGATGACTCGTGATCTTCTTGGTCTGAGCATAGGTGGTGCTGGTGGTGGCGCCGGAGGGAGGGGTGGTCTTTCTGCTTTGCTTACCTCTTTTGGTGGTAGATTTGATGTTGCAGAATCATCGACGGCCGGGAGGAATGGTCCGGCGGCAGGAGACTAG 1584 0.4987 MVNWRRFRHFLLLSCCAFESLPLPLSLLPSASVCDRLLISIHTMTELENPTSMAVSAASGELHNAPDELPPLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDIRKRVYVCPETSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEGSEGNSNGKVAMASPPQPPLTPSTSVVSPALSIQSSEVSENPIRLSPPCSNVTCLPPAATVTNSTPSNSTSVFASIFASSSTPTSSTLPSYSNMMSNLARSECPTTTPTLSVIEPTSLSLSTSLYLSNNDSSVFPDQRDPRHYTVSPQPALSATALLQKAAQMGAAASNASLLRGLGLAQNDGTSTQWNSRVKTEDHSLPDDGLVLGIPSGNTGFADLIMGSSSSPLPFGGQPMTRDLLGLSIGGAGGGAGGRGGLSALLTSFGGRFDVAESSTAGRNGPAAGD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1078 527 SUPERFAMILY beta-beta-alpha zinc fingers 101 199 IPR036236 -
Mibi05g1078 527 MobiDBLite consensus disorder prediction 241 255 - -
Mibi05g1078 527 FunFam protein indeterminate-domain 12-like 81 149 - -
Mibi05g1078 527 SMART c2h2final6 143 173 IPR013087 -
Mibi05g1078 527 SMART c2h2final6 178 198 IPR013087 -
Mibi05g1078 527 SMART c2h2final6 102 124 IPR013087 -
Mibi05g1078 527 MobiDBLite consensus disorder prediction 241 269 - -
Mibi05g1078 527 FunFam protein indeterminate-domain 5, chloroplastic-like 156 235 - -
Mibi05g1078 527 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Mibi05g1078 527 Gene3D Classic Zinc Finger 138 226 - -
Mibi05g1078 527 Pfam Zinc-finger of C2H2 type 102 124 - -
Mibi05g1078 527 Gene3D Classic Zinc Finger 98 125 - -
Mibi05g1078 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
Mibi05g1078 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 63 484 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1078 Mibi-ChrMibi05 13133361 13136134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1078 73 505 IDZ Gene Family AT5G66730 52.431 6.23e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi05g1078 zf-met 0.0038 CL0361