Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1042 ATGGCTATCCGAGTTACTTTATCCTATTCCGGCTACTTTGCCCAGGGCCTAGCTTCCGCAGGTTGTCGTGCCGGTAATTCACGGTGCCTCCACGAATGTTGGGTTCGATCTCGATTATTTGGCACTGGTCAGAAGCCTGATCGTGATCCCTCTGGAGGCGTTCGTAATTACCGGTCTGATTACGAGCGGTCTAAATCTGATTGCTGGGCTAAGAGTTCTGCCTCTTTGTATTCTACTATCTCCAAAGAATTTCTGGGAGATAATTCTGATAATCCGACCATTTTGGGTTTGATTTCGCTTTTGAAGTCAACCGGTTCGGTATCGGCCTCATCTGCGGCCACTATGTCTGTTTCTGGTGTTTCCCCGATTAACGTTTCTTCGATTGTTCCCTTTTTTAAGGGATCGAAGAGTCTTCCTAGTAACGAGTCAACTCCTGTTTCTGCAACTCTTGAGGTGGATAAAGGAGGGACGTTGTGTTATAATGGTAGTGGTGATGTGAATTTAGGGTATAATCCCAAGAGTATTGAGAAGTCAAGTTGGATATCGCGCTTGTTGAACGTTTGTTCTGAGGATGCGAAGGCTGTTTTTACTGCTGTGACTGTTAGTGTGCTTTTTAAGTCGTTCTTGGCTGAACCCAGATCGATTCCCTCGGCTTCTATGTACCCAACTCTGGACGTGGGTGACCGTATTTTAGCGGAGAAGGTTTCATTCCTTTTCAGAAAGCCTGATGTTTCAGATATTGTCATTTTTAAAGCACCTCCTAGTTTACAGGAGAAAGGTTTTAGTTCGGCTCATGAATTTATTAAGAGAATTGTGGCAAAGGCTGGGGACTGTGTAGAGGTTCGGGACGGAAAACTGCTGGTGAATGGTGTAGCTGAAGAAGAAGAATTTGTTTTAGAGCCCCTTTCTTATGATATGGATCCGATGGTTGTGCCAGAAGGTTATGTCTTTGTGTTGGGAGACAATCGTAATAATAGTTATGACTCACATGATTGGGGTCCACTTCCTATAAAGAACATTGTCGGTAGATCCATGTTTCGGTACTGGCCTCCATCTAAAGTATCTGACACCCTTGATAAATCACCCAGTGGAAACAATTCTCTGGCTGTTTCTTGA 1116 0.4435 MAIRVTLSYSGYFAQGLASAGCRAGNSRCLHECWVRSRLFGTGQKPDRDPSGGVRNYRSDYERSKSDCWAKSSASLYSTISKEFLGDNSDNPTILGLISLLKSTGSVSASSAATMSVSGVSPINVSSIVPFFKGSKSLPSNESTPVSATLEVDKGGTLCYNGSGDVNLGYNPKSIEKSSWISRLLNVCSEDAKAVFTAVTVSVLFKSFLAEPRSIPSASMYPTLDVGDRILAEKVSFLFRKPDVSDIVIFKAPPSLQEKGFSSAHEFIKRIVAKAGDCVEVRDGKLLVNGVAEEEEFVLEPLSYDMDPMVVPEGYVFVLGDNRNNSYDSHDWGPLPIKNIVGRSMFRYWPPSKVSDTLDKSPSGNNSLAVS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1042 371 Gene3D Umud Fragment, subunit A 205 361 - -
Mibi05g1042 371 SUPERFAMILY LexA/Signal peptidase 207 354 IPR036286 -
Mibi05g1042 371 TIGRFAM sigpep_I_bact: signal peptidase I 194 350 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g1042 371 CDD S26_SPase_I 211 343 IPR019533 GO:0004252|GO:0006465
Mibi05g1042 371 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
Mibi05g1042 371 ProSitePatterns Signal peptidases I signature 3. 316 329 IPR019758 GO:0004252|GO:0016020
Mibi05g1042 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 311 330 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g1042 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g1042 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g1042 371 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Mibi05g1042 371 PANTHER SIGNAL PEPTIDASE I 166 356 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g1042 371 FunFam Peptidase/ serine-type peptidase 217 348 - -
Mibi05g1042 371 Pfam Signal peptidase, peptidase S26 192 349 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1042 Mibi-ChrMibi05 12803005 12805240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1042 220 350 MADS-box Gene Family AT1G29960 33.835 9.70e-15 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1042 05 12803005 12805240 Mibi05g1042 05 12803005 12805240 ECH