Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1021 ATGCAATCGAACGGTTCTGATTCGCAACAACAGCAATCGTCGGAGCAGAATCAACGGCAGCAGCAAACGCCGCCACAGCCGTCGATACAGCCGGTGGCGCTGCCGCAACAGTGGATGCCGATACAATACCCTGTGGCGGCGATGGTAATGCAGCATCACATGTTGCCACCTCAGCATTATGGGCCGCCGCCGCCACCTCAGCCCTACATGCCTTACCATCATCAGTACCAGCAATTACCTCATGTATCTCACCCTCAACAACAACAACAGTATCAGCATCAGGGATCTACTGGTGATAACAAAACGATCTGGGTCGGTGATTTACATCATTGGATGGATGAGAATTATCTCCATGGCTGTTTCGCTTCCACCGGAGAGATTTCTTCCATTAAGGTTATTCGCAATAAGCATAATGGCCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCCCATGCCACGGCTGAAAACGTTTTACAGAATTATGGTTCCATTTTGATGCCCAATACGGATCAACCTTTTCGCCTGAACTGGGCGACATTTAGCACAGGAGACAAGCGTTCGGATAATGCTCCCGACCTTTCTATTTTTGTAGGAGACTTAGCTGCAGATGTTACAGATAGCATGTTGCACGAAACTTTTGCTAGTAGATATCCTTCTGTCAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGGTATGGCTTCGTCAGGTTTGGAGACGATAATGAGAGGTCTCAGGCTATGACCGAAATGAATGGTACGTATTGTTCTAGCAGACCAATGCGTATTGGTGCTGCAACCCCTAGGAAATCATCTGGCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCAGATTCAACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGATGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTATCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCAAACAGGAACAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACGGTGATTGGCAAGCAGACAGTTCGCCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTCAGAGCGGACTTTGGCGGCAATCACTGGAACGGGGCGTATTATGGAGGTCCTGTTTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGAATATATGCTGCTGCATATGGGTCTTACCCCATGTATGGAGGCCACCAACAACAAGTAAGCTAA 1296 0.4676 MQSNGSDSQQQQSSEQNQRQQQTPPQPSIQPVALPQQWMPIQYPVAAMVMQHHMLPPQHYGPPPPPQPYMPYHHQYQQLPHVSHPQQQQQYQHQGSTGDNKTIWVGDLHHWMDENYLHGCFASTGEISSIKVIRNKHNGLSEGYGFVEFYSHATAENVLQNYGSILMPNTDQPFRLNWATFSTGDKRSDNAPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGTYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGGNHWNGAYYGGPVYDGYGYALPPPHDPRIYAAAYGSYPMYGGHQQQVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1021 431 FunFam Polyadenylate-binding protein RBP47B 100 180 - -
Mibi05g1021 431 Gene3D - 181 286 IPR012677 -
Mibi05g1021 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 89 376 - -
Mibi05g1021 431 Gene3D - 287 403 IPR012677 -
Mibi05g1021 431 MobiDBLite consensus disorder prediction 263 306 - -
Mibi05g1021 431 FunFam Polyadenylate-binding protein RBP47C isoform A 193 269 - -
Mibi05g1021 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Mibi05g1021 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 165 IPR000504 GO:0003723
Mibi05g1021 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 365 IPR000504 GO:0003723
Mibi05g1021 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Mibi05g1021 431 CDD RRM2_SECp43_like 193 272 - -
Mibi05g1021 431 FunFam Polyadenylate-binding protein RBP47 285 403 - -
Mibi05g1021 431 SUPERFAMILY RNA-binding domain, RBD 193 373 IPR035979 GO:0003676
Mibi05g1021 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Mibi05g1021 431 CDD RRM3_NGR1_NAM8_like 299 370 - -
Mibi05g1021 431 MobiDBLite consensus disorder prediction 274 306 - -
Mibi05g1021 431 CDD RRM1_SECp43_like 102 182 - -
Mibi05g1021 431 Gene3D - 100 180 IPR012677 -
Mibi05g1021 431 SUPERFAMILY RNA-binding domain, RBD 65 181 IPR035979 GO:0003676
Mibi05g1021 431 SMART rrm1_1 301 368 IPR000504 GO:0003723
Mibi05g1021 431 SMART rrm1_1 102 177 IPR000504 GO:0003723
Mibi05g1021 431 SMART rrm1_1 195 269 IPR000504 GO:0003723
Mibi05g1021 431 MobiDBLite consensus disorder prediction 1 31 - -
Mibi05g1021 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1021 Mibi-ChrMibi05 12572656 12576042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1021 103 410 Eukaryotic Initiation Factors Gene Family AT2G23350 27.711 1.27e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1021 05 12572656 12576042 Mibi05g1021 05 12572656 12576042 ECH