Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0972 ATGCAAGGGAAAAGGGGTAGAATTGGTTCCTTGCCTGAAACCTTGGAATTTGATTGTGGATCTACTTCAGGTGATGATCCTGTGGATCAACAGATTTGCTGGGATAGCATGAGGAACCCTGTGGAAAATCAAATGCCTCAATTTATGCTTTCACCTGGTGATATGAACCCGTTGTATGCAAATTCAATTAACCGTGAATGGAAGAGCACGGATAATTGGAGAATTGGTGAGCCAAGTTCTAGTGGTCCGCATAGTCAAATTAACAATGACGAGCAGAAAAGAGAACTTGGATGGTCGTCTTCAACAAGAGCTGGTGCTGTTGCCGGTTCAACATTAGAGCGACACTCTGAATCAACCAATTTACTGTCATTGGACAACTTCAATTCGGGTCCTTTGTTTATGAACAACTCCAATCCTCATTCTGTAACACACAGTATCAACTTAAATGCCAGTTCAGCAGATACTGGCTGTAACATGGGGCAACTTCCCGAGCATTCTGGCTTGGGCAAATCAAATGGATCAGTAAATGAGCCTATCCCACCTTCTGTTGGTTCTGCGCCCTTTTATAATCCTTCTGGAAGAAGCATGGTAGATAATAGTAGTGTTAGGCCAGGGTGTACTCTTGATACTCAGCATGTATCTTGTAAAAGAAAGGCTGTTGAAGGGTATGTTGGACAATCTTCAGGTGGGGAAAGTTCTAGCTACAGCCAGGATACAGAAAGCAGTGCTTGGTGTACACTTCCGACTCAGAGTGATTCTCGGAGCAGTTTAAGCAGTTCTGCTTTGTTAGCTCAGATAAGTTCTAGAACTGGCCATGATGTGGGCAATGAAGGGGGAGATGAATCTTTAGAGAGCACTAATAATTTGAATGTTGCAGGAAGCTCAAATAGCTTCCTCAGGAATTCCCGTTTGAGGATAAATCCTTCAAACCATCAGGATTCCACTTCTTATATTGCATTGTCAAATGGCAGTGTAACTAGGCGTTCTACAATTCCTTCATCATCTCCTATGACACAAGTTTTTCATCCTGTTGGTAATTCTCTGGGTCTGAGGTCAGTACCATATGCAGATGATATGGTTTCTCAAAGTTTTCGTCCTGTTGGTAATTATCCAGATCTGAGGTCAGCACCATATGCAGATGATATGGTTCCTCAAAGCCAGCCACTTGGAACTAGTGCTTCTCTACACAGGAATATGCCGTCATTTAGGTGGAGTGGCAGCTCTATGATATGGCCAGACAGGGATAATCTACTTGAAGAAGGAAGTTTAAGAAGCATGTATGAACATCCAATGTTTGTGCCAGTGGCTGATTTAAGAAATTCAGTTCGAAATCCAACCAATAATAGAGCTTCAAGTAGCGCAAATTTAAATATATCAGGTAATATCACTTCCTCACTGCATGCTGGGTCAAGTTCGGCCATCAATTCACCATCTGCTCCATCCCGGGTTTCTCGTCCCAATCCTCTACATCATCCACGGAGGTTATCTGATCACGCTCGCAGGTCATTTTTGTCCTCTGGTTCTGAGGCTGCGGGTGGTTTCAGCTATAGCAATTCTTTCTTGCACTCTGCTTCTATTGCTTCATCTGAAGCAAGGGCATCATCATCTCGAGCTGGTAGGCATGGACGTAACCAGTCACACTTTAGATCATCATGGATGGAGAGGCGAGGTGATAGTAACCTAAGACTTCCCTATTCATTGCAAGCTCTGGCTGTTGCCAGTGAAGGAAGTAGTAGACTTATATCTGAGCTCCGCAGTGTTTGGGGCATTATGCATAGGGGAGGGAACCTTCGGTTTGAGGATTTTATGATGTTTGACCATTCAGTATTTTCTGAAATGGCTGATATTCATGACCGACACAGGGACATGCGACTTGATGTTGATAGCATGTCTTACGAGGAATTGTTGGCTCTTGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATTGAAACTACTGAAACAGAGGAAATATTCAGTTGATGAAGGGTCTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAAAGTTTGTCAACGGAGAAGACGTTGGAACGCTTGATTGTGGCCATGATCACCATACCAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGTCCCATTTGTAAGACGACAGGCTTGGCAACATGA 2172 0.4365 MQGKRGRIGSLPETLEFDCGSTSGDDPVDQQICWDSMRNPVENQMPQFMLSPGDMNPLYANSINREWKSTDNWRIGEPSSSGPHSQINNDEQKRELGWSSSTRAGAVAGSTLERHSESTNLLSLDNFNSGPLFMNNSNPHSVTHSINLNASSADTGCNMGQLPEHSGLGKSNGSVNEPIPPSVGSAPFYNPSGRSMVDNSSVRPGCTLDTQHVSCKRKAVEGYVGQSSGGESSSYSQDTESSAWCTLPTQSDSRSSLSSSALLAQISSRTGHDVGNEGGDESLESTNNLNVAGSSNSFLRNSRLRINPSNHQDSTSYIALSNGSVTRRSTIPSSSPMTQVFHPVGNSLGLRSVPYADDMVSQSFRPVGNYPDLRSAPYADDMVPQSQPLGTSASLHRNMPSFRWSGSSMIWPDRDNLLEEGSLRSMYEHPMFVPVADLRNSVRNPTNNRASSSANLNISGNITSSLHAGSSSAINSPSAPSRVSRPNPLHHPRRLSDHARRSFLSSGSEAAGGFSYSNSFLHSASIASSEARASSSRAGRHGRNQSHFRSSWMERRGDSNLRLPYSLQALAVASEGSSRLISELRSVWGIMHRGGNLRFEDFMMFDHSVFSEMADIHDRHRDMRLDVDSMSYEELLALEERIGNVSTGLSEETILKLLKQRKYSVDEGSQCEAEPCCVCQEKFVNGEDVGTLDCGHDHHTNCIKQWLMQKNLCPICKTTGLAT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0972 723 Pfam Ring finger domain 676 717 IPR001841 -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 188 204 - -
Mibi05g0972 723 SMART ring_2 676 716 IPR001841 -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 466 497 - -
Mibi05g0972 723 FunFam E3 ubiquitin-protein ligase MBR2 644 721 - -
Mibi05g0972 723 SUPERFAMILY RING/U-box 675 719 - -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 155 179 - -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 466 483 - -
Mibi05g0972 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 720 IPR013083 -
Mibi05g0972 723 ProSiteProfiles Zinc finger RING-type profile. 676 717 IPR001841 -
Mibi05g0972 723 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 212 721 IPR045191 GO:0061630
Mibi05g0972 723 MobiDBLite consensus disorder prediction 155 204 - -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 532 551 - -
Mibi05g0972 723 CDD RING-H2_TTC3 675 717 - -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 72 99 - -
Mibi05g0972 723 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0972 Mibi-ChrMibi05 12127391 12131374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0972 1 723 C3H Transcription Factor Family AT2G15530 31.373 7.28e-72 246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1671 08 33287203 33290725 Mibi05g0972 05 12127391 12131374 CCT
Mibi05g0972 05 12127391 12131374 Mibi05g0972 05 12127391 12131374 ECH