LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g0969	ATGAGAATCAAGACGGAGAAGAGAAAGCAAGATGAAACAAAACAGAAGCCGTACAGAGGAATTAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTAGAGAACCAAACAAGAGGTCAAGACTATGGTTAGGCTCATACATAACCCCTGTGGCCGCCGCTCGAGCCTACGACACCGCCGTTTTCTATCTCAGGGGACCCACCGCCCGCCTCAACTTCCCTGAGCTGTTATTCCACGACGGCGACGGCGACGGCGACCACCACATGTCACCGGATTTAATTAGGAAAAGGGCCACCGAAGTCGGCGCGAGAGTTGATGCTATTCAAGCCTCTCTTCTTCATCATCACCACCCAAATTCTCACATCCAAACCCACTCTGATAAGCCCGATTTGAATGAGTTTCCACGGCCTGAGGATCTTGTTGATGATTTCAATTAG	438	0.5046	MRIKTEKRKQDETKQKPYRGIRMRKWGKWVAEIREPNKRSRLWLGSYITPVAAARAYDTAVFYLRGPTARLNFPELLFHDGDGDGDHHMSPDLIRKRATEVGARVDAIQASLLHHHHPNSHIQTHSDKPDLNEFPRPEDLVDDFN	145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g0969	145	Gene3D	AP2/ERF domain	16	75	IPR036955	GO:0003700\|GO:0006355
	Mibi05g0969	145	ProSiteProfiles	AP2/ERF domain profile.	17	74	IPR001471	GO:0003700\|GO:0006355
	Mibi05g0969	145	MobiDBLite	consensus disorder prediction	115	145	-	-
	Mibi05g0969	145	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED	4	140	-	-
	Mibi05g0969	145	SMART	rav1_2	17	80	IPR001471	GO:0003700\|GO:0006355
	Mibi05g0969	145	FunFam	Ethylene-responsive transcription factor 2	16	75	-	-
	Mibi05g0969	145	CDD	AP2	18	76	IPR001471	GO:0003700\|GO:0006355
	Mibi05g0969	145	SUPERFAMILY	DNA-binding domain	17	75	IPR016177	GO:0003677
	Mibi05g0969	145	MobiDBLite	consensus disorder prediction	120	145	-	-
	Mibi05g0969	145	Pfam	AP2 domain	18	66	IPR001471	GO:0003700\|GO:0006355
	Mibi05g0969	145	PRINTS	Ethylene responsive element binding protein signature	56	76	IPR001471	GO:0003700\|GO:0006355
	Mibi05g0969	145	PRINTS	Ethylene responsive element binding protein signature	18	29	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g0969	Mibi-ChrMibi05	12083223	12083660	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g0969	14	144	AP2-EREBP Transcription Factor Family	AT3G50260	60.145	2.68e-51	159

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi05g0969		AP2	1.4e-10	CL0081