Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0928 ATGGGAAGAGTGAAGCTTCAGATAAAGAAGATAGAGAACGCAACGAATAGACAGGTCACCTTCTCTAAGAGGAGAAATGGGCTCATCAAGAAAGCTTATGAACTTTCTGTACTTTGTGATGTGGATGTGGCTCTCATCATGTTTTCTCCCTCCGGCAAAGCAAGTCTCTTCTCTGGTGCATTGAAGAAATTTTTGAGCGATATCTCAATCTTCCTGAACAAGAACGGGTTAGGTATGATTCTGGCTCCAGCCCCGCTTATCCCTCATCTCATCCATATTCTAAAGGTTCTTACTAAGGTCAAAGCCGACGCCGATGAAGTATACCGAACCCCTAGCCCCATGATTATTGCGGACTCCCAGATTGAGGGTATCAAAAGGGAAATTTTCATGTGCAAGTCTCAATTGAAAGAGACGGGGAAGAGATTAAGGATATTCGAAGGAGACCCTTCTGAAATCACGACACTGTACGAGGCTGAATATCGCGAGAACGCCCTCCTGGAAGCTCTAAAACAAGTGCAGCTGCGAAAACAAGCTCTGGAGGAAGAGTACATTTCAAATAATGCAGCTGCAACTCCCCAGCAGGTAGATGCAGATGGACTTGGTGACGGAAGCTTGAAGAACATGGTGGATTGGCTTCCTCAGGTTCAGAACCTGACCTTTACGGATTATGCTGACGTCGGCTTTCTTCCTTTCGGGTATTTTAATTATATATATTTTGAACATGAAGCATATGGTTTATGGATGAATTCGCCAGTTCCATCTACTTCTAGCTAG 774 0.4432 MGRVKLQIKKIENATNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGKASLFSGALKKFLSDISIFLNKNGLGMILAPAPLIPHLIHILKVLTKVKADADEVYRTPSPMIIADSQIEGIKREIFMCKSQLKETGKRLRIFEGDPSEITTLYEAEYRENALLEALKQVQLRKQALEEEYISNNAAATPQQVDADGLGDGSLKNMVDWLPQVQNLTFTDYADVGFLPFGYFNYIYFEHEAYGLWMNSPVPSTSS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0928 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi05g0928 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi05g0928 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi05g0928 257 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Mibi05g0928 257 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Mibi05g0928 257 Coils Coil 162 182 - -
Mibi05g0928 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Mibi05g0928 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi05g0928 257 SUPERFAMILY SRF-like 2 59 IPR036879 GO:0003677|GO:0046983
Mibi05g0928 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Mibi05g0928 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0928 Mibi-ChrMibi05 8717451 8719009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0928 1 214 Type I MADS-box Gene Family AT1G22130 42.152 1.75e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi05g0928 SRF-TF 9.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0928 05 8717451 8719009 Mibi05g0928 05 8717451 8719009 ECH