Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0914 ATGGCTCTTGAAGCTATGAAGTCGCCGGCCACCGCCACACCTTCGTTCCCGTTTCAACCCTCCGACCTGCACCAACTGGAGCCATGTCCATGGGCCAAGCGAAAGCGTTCTAAGAGGACTCGCCTTGACCAACCGTCTTGTTCTGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCACGTGATTCAACCAATTCCACCGCCTCACGTGACCGCCATGCCTCGCCGGATCCCAAGCTCAGTTACAAATGTTCTGTCTGCAACAAAGCCTTCTCATCTTATCAAGCTCTTGGTGGTCACAAGGCCAGTCATCGGAAACTCGCCGGTGAAGATCACAACAACAATTCTTCCAACGTTACAAATGAATCGCGCAATTCTGGAACTACTTCTGGATCAAACGGTGGGGGTAGGCTCCACGAGTGTTCGATCTGCCATAAGTCCTTCCCTACTGGACAGGCCTTGGGAGGACACAAGCGTTGCCACTACGACGGCGGCGCTAGTAGCAGCGCCGCCACGGCCTCCGACGGCGTCGGATCGGCCCACCGTGACTTCGATCTGAACGTACCGGCGTTCTCGTTGACGGCGGAGGAGGAGGTGGAGAGCCCTCACCCACTGAAGAAGCCTCGCCTTTCGATGGCGAGTAACGACGAGTGA 657 0.5647 MALEAMKSPATATPSFPFQPSDLHQLEPCPWAKRKRSKRTRLDQPSCSEEEYLALCLIMLARDSTNSTASRDRHASPDPKLSYKCSVCNKAFSSYQALGGHKASHRKLAGEDHNNNSSNVTNESRNSGTTSGSNGGGRLHECSICHKSFPTGQALGGHKRCHYDGGASSSAATASDGVGSAHRDFDLNVPAFSLTAEEEVESPHPLKKPRLSMASNDE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0914 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 162 IPR013087 -
Mibi05g0914 218 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Mibi05g0914 218 SMART c2h2final6 83 105 IPR013087 -
Mibi05g0914 218 SMART c2h2final6 140 162 IPR013087 -
Mibi05g0914 218 MobiDBLite consensus disorder prediction 200 218 - -
Mibi05g0914 218 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 191 IPR044653 GO:0003700
Mibi05g0914 218 MobiDBLite consensus disorder prediction 103 136 - -
Mibi05g0914 218 Pfam C2H2-type zinc finger 140 164 - -
Mibi05g0914 218 Pfam C2H2-type zinc finger 83 107 - -
Mibi05g0914 218 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Mibi05g0914 218 MobiDBLite consensus disorder prediction 1 44 - -
Mibi05g0914 218 MobiDBLite consensus disorder prediction 196 218 - -
Mibi05g0914 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Mibi05g0914 218 Gene3D Classic Zinc Finger 80 162 - -
Mibi05g0914 218 MobiDBLite consensus disorder prediction 113 136 - -
Mibi05g0914 218 SUPERFAMILY beta-beta-alpha zinc fingers 83 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0914 Mibi-ChrMibi05 8593599 8594255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0914 1 213 C2H2 Transcription Factor Family AT1G27730 47.280 1.95e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi05g0914 zf-C2H2_6 8.4e-13 CL0361