Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi05g0905 | ATGGCATTTGCAGGAACAACCCAGAAATGTATGGCCTGTGAGAAAACAGTTTATTTGGTTGATAAGTTAACTGCAGATAACCGAGTGTACCACAAGGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAATTCCTTCGAGGGAGTTCTTTACTGCAAGCCACACTTCGACCAATTGTTCAAAAGAACTGGCAGCCTTGAGAAAAGCTTCGATGGAACACCAAAAATTGCTAAACCAGAAAAAAGCATTGATAATAATGAGAAGCCTGCAGCGACCAAAGTGTCAAGTATGTTTGCTGGAACCAGAGAAAAATGTGCTGGTTGTCAGAAAACAGCTTATCCAACGGAGAGGGTTACTGTGAATGGAACTCCATACCACAAGAGTTGTTTCAAGTGTTGTCATGGAGGGTGTGTTATAAGTCCTTCCAACTACATTGCACATGAGGGCAAACTCTACTGCAAACATCACCACACCCAGCTGATCAGGGAAAAGGGCAATTTGAGCCAGCTTGAAGGTGACCGCGACAAGAGTACAGTGCATGATAAAATTATTGATGAACAAGTTTCTGCCTTCACATAG | 597 | 0.4288 | MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFDGTPKIAKPEKSIDNNEKPAATKVSSMFAGTREKCAGCQKTAYPTERVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHTQLIREKGNLSQLEGDRDKSTVHDKIIDEQVSAFT | 198 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi05g0905 | 198 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Mibi05g0905 | 198 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Mibi05g0905 | 198 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Mibi05g0905 | 198 | ProSiteProfiles | LIM domain profile. | 109 | 169 | IPR001781 | - | |
| Mibi05g0905 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Mibi05g0905 | 198 | PANTHER | OS06G0237300 PROTEIN | 4 | 107 | IPR045268 | - | |
| Mibi05g0905 | 198 | CDD | LIM2_SF3 | 111 | 171 | - | - | |
| Mibi05g0905 | 198 | FunFam | LIM domain and actin-binding 1 | 105 | 175 | - | - | |
| Mibi05g0905 | 198 | SMART | lim_4 | 110 | 162 | IPR001781 | - | |
| Mibi05g0905 | 198 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Mibi05g0905 | 198 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Mibi05g0905 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Mibi05g0905 | 198 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Mibi05g0905 | 198 | Gene3D | Cysteine Rich Protein | 105 | 175 | - | - | |
| Mibi05g0905 | 198 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Mibi05g0905 | 198 | Pfam | LIM domain | 111 | 165 | IPR001781 | - | |
| Mibi05g0905 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 137 | 176 | - | - | |
| Mibi05g0905 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 103 | 136 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi05g0905 | Mibi-ChrMibi05 | 8511642 | 8513020 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Mibi05g0905 | LIM | 1.9e-11 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mibi08g1735 | 08 | 34063232 | 34064939 | Mibi05g0905 | 05 | 8511642 | 8513020 | CCT | |
| Mibi05g0905 | 05 | 8511642 | 8513020 | Mibi05g0905 | 05 | 8511642 | 8513020 | ECH |