Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0896 ATGACTCTTCATTCTTCAGGCGGCGGCGCCGAGGTGTTCGATCTAGAAACAGCCGTGAAAGGAGGAGTTTTGGACGGCAAAGCTGCTCTTTCCGGCGGTGGTTTCGGTGGCGGAGATAAAATAGATCTGAAGGCGTTGATTGAAGAGCTGGATTCAGTTGATGTGCCCTCTGTGTTTGTGTGTCCAATCTCGTTACAGCCCATGCGAGAGCCTGTGACCATTTGCACTGGTCAGACCTATGACAGACCCAACATCCTTAAATGGTTCGCTTTGGGCCATAATACTTGTCCCACAACCATGCAGGAGCTTTGGGATGACTCAGTGACGCTCAACAGAACTCTCAGTCAATTAATCCATACTTGGTTCTCTCAGAGGTATGTCTCATTGAAGAAGCAGTTCCATGATGTTCAAGGGAGAGCCTTGGAGCTCTTAGAGACGCTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCATGCCCTTCGAGATCTTAGGCAGATTGTCACATCCCATGCGTCGACAAGGAAGACAGTTGTAGAAAATGGTGGGCTTGATTTGATCTCTTCTTTGCTTGGTCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCAATTGGGATTCTGGTAAACTTGGATTTGAATTCCGAGTCGAAGAGAAATCTGATGAATCCGGCTAAGATTTCTTTGTTGGTGGATGTTATGAACGAAGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGATTGAAGCATTGTTGATGGAAGTGAATGAGTCTGAGACTGAGATTATCTCAAGCTTGAGTCTTTTGGTTGGATTATTGAGGTTGGTGAGGGATAAGAAACACCCATCTGGGGTATTAACTGGACTCATGTTACTGAAGAAAATCTGTTCATACGAATCAGTGAGAAGCTCCATGGTTAGCTTAGGGTCAGCTGCTCAGTTGATTGAGCTTCTTCCAAGTTTGAACCATGAGTGCCTAGAGATAGCTCTGTACATTCTAGAGGTATTGTCAACCATTCCAGAGGGAAGACTGGCATTAAAAGAGTGCCCAAACATCATACCAAATGTGGTGCAGTTAATGATGAGAGTATCAGAGAGTAGCACCCAATTTGCTTTGTCAATATTGTGGGCTATCTATAAGCTTGCCCCTGAAGAATGTGCTTCACAAGCGGTAGAGGCAGGTTTGGCACCCAAGCTTTTGCTTGTGATTCAGAGTGGTTGCAGCCCAGCGTTGAAGCAGATGTCTACTGAGTTCTTAAAAATGTGCAGTCTCAATTACTCAACTAGTCTCTTGATTTCTAAATGTATGCTCACCAGAACAATACGATGA 1323 0.4528 MTLHSSGGGAEVFDLETAVKGGVLDGKAALSGGGFGGGDKIDLKALIEELDSVDVPSVFVCPISLQPMREPVTICTGQTYDRPNILKWFALGHNTCPTTMQELWDDSVTLNRTLSQLIHTWFSQRYVSLKKQFHDVQGRALELLETLKKVKGQARVHALRDLRQIVTSHASTRKTVVENGGLDLISSLLGPFTSHAVGSEAIGILVNLDLNSESKRNLMNPAKISLLVDVMNEGTIETKMNCAKLIEALLMEVNESETEIISSLSLLVGLLRLVRDKKHPSGVLTGLMLLKKICSYESVRSSMVSLGSAAQLIELLPSLNHECLEIALYILEVLSTIPEGRLALKECPNIIPNVVQLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCSPALKQMSTEFLKMCSLNYSTSLLISKCMLTRTIR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0896 440 CDD RING-Ubox_PUB 59 101 IPR045210 -
Mibi05g0896 440 Pfam U-box domain 55 125 IPR003613 GO:0004842|GO:0016567
Mibi05g0896 440 SUPERFAMILY RING/U-box 49 125 - -
Mibi05g0896 440 Gene3D - 132 435 IPR011989 -
Mibi05g0896 440 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Mibi05g0896 440 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Mibi05g0896 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 131 IPR013083 -
Mibi05g0896 440 PANTHER WDSAM1 PROTEIN 51 427 IPR045185 GO:0061630
Mibi05g0896 440 SUPERFAMILY ARM repeat 135 423 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0896 Mibi-ChrMibi05 8355779 8357101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0896 7 440 U-box Gene Family AT3G49810 62.212 0.0 534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0896 05 8355779 8357101 Mibi05g0896 05 8355779 8357101 ECH