LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g0893	ATGCTCTTTCACGAAGAAGAAGAAGAAGCGGTTCAGTTCCCATGCCCGGTTCGGGAAACGGCTGTTCTCACGACTCGGGATATAGAGGAGTTATTATCCCTTATACAATCAGGAGATGAAGAAGAAGATCATAATCACACCATATCCAGCCCAAGCTCCGGTTCGCAAGGGTCGAATCGGGGGGTTTACTCCAATGACGAGAGAAAGCGAAGGAGGATGCAGTCGAACCGGGAATCGGCCCGGCGGTCCCGCTGGAGAAAGAAGATACACGTAGAAAACCTGAACAACGAAGCGAACCGGTTCACAATTGAAAACCAACAGCTCAAAAACCGGCTTGGCCTAGCGGTTCATCAACTCCGTCTAGTATACTCAGAGAATGAACGGCTGAGAACCGAATCGGCGGCCCTCATGGCCAGACTTTCTGATCTATATTTGACTTTAGGCTCCATGCATATTAATTAA	462	0.4892	MLFHEEEEEAVQFPCPVRETAVLTTRDIEELLSLIQSGDEEEDHNHTISSPSSGSQGSNRGVYSNDERKRRRMQSNRESARRSRWRKKIHVENLNNEANRFTIENQQLKNRLGLAVHQLRLVYSENERLRTESAALMARLSDLYLTLGSMHIN	153

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g0893	153	CDD	bZIP_plant_GBF1	69	120	IPR045314	GO:0003700\|GO:0006355
	Mibi05g0893	153	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	66	129	IPR004827	GO:0003700\|GO:0006355
	Mibi05g0893	153	Gene3D	-	66	144	-	-
	Mibi05g0893	153	MobiDBLite	consensus disorder prediction	48	62	-	-
	Mibi05g0893	153	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	71	86	IPR004827	GO:0003700\|GO:0006355
	Mibi05g0893	153	FunFam	BZIP transcription factor	66	118	-	-
	Mibi05g0893	153	Coils	Coil	91	111	-	-
	Mibi05g0893	153	SUPERFAMILY	Leucine zipper domain	68	120	IPR046347	GO:0003700\|GO:0006355
	Mibi05g0893	153	SMART	brlzneu	64	128	IPR004827	GO:0003700\|GO:0006355
	Mibi05g0893	153	PANTHER	BZIP TRANSCRIPTION FACTOR 44	43	145	-	-
	Mibi05g0893	153	MobiDBLite	consensus disorder prediction	63	80	-	-
	Mibi05g0893	153	MobiDBLite	consensus disorder prediction	38	84	-	-
	Mibi05g0893	153	Pfam	bZIP transcription factor	68	113	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g0893	Mibi-ChrMibi05	8327159	8327620	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g0893	27	143	bZIP Transcription Factor Family	AT4G37730	43.548	4.08e-21	85.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Mibi05g0893		bZIP_1	2e-10	CL0018