Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0889 ATGGGGAGTCATGAAAACACAATGGGGTTTCAACACAGAAATGAGAGTATTCTGAGTCGTGGTTTGGGCACCAATGTTTCAGATGTAAGCAATCCTTTTCTTGGTTCATCTGCTTGGGATCCACTTTTTTCATTGAGTCAGACTCAAACCTTTGCAGGCTCATCATTGGTTTCACATAGTGACTTTCCCAACTCTTCTTACCCGAGTTTCTTGGAAAATCAGGGAATGAGTAGCTCCTCTCACTTTGTTCACTATATGTCTGAATCAAATTTTGCTGATATGATCCCAAAGATCCCTTCCTATGCAAATGGTGATATATCTAATGCAGGATATGCGTTAAGTTATAATCCAAATAAGGAAGCAGGCATTGGAATGGCTCCATTAAATGATGCACAATTACAGGGTGAGCATTCCACTCCTGAAGAGGGAGCCACATCCTCACCTATTGGAAATAGAAGAAAACGAGGGCTTGATCATAGTCCTACATTCAGTCCAAGTAAGAGTGCTGAAGGAGAAGCACTCAAGGGTTCATCAGGGAAAAGTTCAGATGGTGTGAAAGAACAAGATGATACGAAGCCAAAATTGGATCAAAATGCAAGTGCAGATTTGCGTGGTAAACAATCAGTGAAGCAAGCTAAAGACAACCCTCAGAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACAAATAGTCATAGCCTTGCAGAAAGGATAAGAAGAGAAAAGATAAGTGAGAGAATGAAGTTACTTCAAGAACTTGTTCCCGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTTGATGAGATTATTAACTACGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACCGTGAACCCTGAACTGAATCTTGATGTGGAGAGGATCCTATCCAAAGATATTCTGCATTCACGCATGGGACACGGAGCTATTGGTGGATATGGAGGTGGTATCATAAACTCAAATCACCTATTTGGTTGTGGGAGTTTTCAGGGGACCCCGGGAAGCATGTCCAGCGCATCACCAAATATCCCTCATATGCCTCAGAGTGTTATGGATCATGAGCTCCACAGCATGTATGGAATGGGATACGATTCTAATTTAGCTCTTCAAAATCTGGGACCACACACAGGGCGGTAA 1182 0.4239 MGSHENTMGFQHRNESILSRGLGTNVSDVSNPFLGSSAWDPLFSLSQTQTFAGSSLVSHSDFPNSSYPSFLENQGMSSSSHFVHYMSESNFADMIPKIPSYANGDISNAGYALSYNPNKEAGIGMAPLNDAQLQGEHSTPEEGATSSPIGNRRKRGLDHSPTFSPSKSAEGEALKGSSGKSSDGVKEQDDTKPKLDQNASADLRGKQSVKQAKDNPQSGEAPKENFIHVRARRGQATNSHSLAERIRREKISERMKLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDVERILSKDILHSRMGHGAIGGYGGGIINSNHLFGCGSFQGTPGSMSSASPNIPHMPQSVMDHELHSMYGMGYDSNLALQNLGPHTGR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0889 393 SMART finulus 241 291 IPR011598 GO:0046983
Mibi05g0889 393 CDD bHLH_AtBPE_like 225 310 - -
Mibi05g0889 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 302 IPR036638 GO:0046983
Mibi05g0889 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 140 361 IPR024097 GO:0006355
Mibi05g0889 393 MobiDBLite consensus disorder prediction 201 215 - -
Mibi05g0889 393 MobiDBLite consensus disorder prediction 182 199 - -
Mibi05g0889 393 FunFam Basic helix-loop-helix transcription factor 232 304 - -
Mibi05g0889 393 Gene3D - 232 307 IPR036638 GO:0046983
Mibi05g0889 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983
Mibi05g0889 393 Pfam Helix-loop-helix DNA-binding domain 238 286 IPR011598 GO:0046983
Mibi05g0889 393 MobiDBLite consensus disorder prediction 133 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0889 Mibi-ChrMibi05 8277925 8280212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0889 30 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.278 5.41e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi05g0889 HLH 7.9e-07 No_clan