Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0879 ATGGCCCACATCGCAGGGGCTAATAGCGCGGCTCTCCCGGGGGAATTTCAATTCAAGCTCTTGGTAGTTATAATTTTAATGGAGGAATACAGTAAGCAGGTGATGATGAGGGAAAGCACATGTTCAAGGCCTAATTTCTTGTACTCTTTCTCCACAGTTGGAGGCTCAAGCCATCATCATCACCAATCAGGCGGATCGGAGAGCCGTCAACCTGTGAAAACCGAAGCCAACACTTCCATTACTAATAACCACTCTCAGATTTTCCACCATCCTTTGATCACTACTCATGGAGGAGGAATAAGCCAAACCTCCTCTGATGAAGTTGAATCTCTTAAAGCTGAAATCGCTGCTCATCCTCACTATACCAACCTTGTAGAAGCATACATCAACTGCCATAAGGTGGGAGCTCCGCCGGAAGTGGCGGCGCGTCTGACTGAGGCGAGGCAAGAGTTTGAGGCACGCCAGCGATCTTTGGCTGGATCCAGGGAAACTTGCAAGGATCCAGAACTTGACCGATTTATGGAAGCTTACTATGACATGCTGGTGAAGTATGAGGAGGAATTGACAAGGCCATTTCAAGAGGCCATGGATTTCATACGCAACATCCAAGCTCAGCTCAATATGCTTTCTGATAATGGACCTGTGCGCATTTTCCCTGAAGATAAGAGCAACGGTGTGGGTTCATGTGAAGAGGATGAAGATAATAGTGGAGGAGAAGCAGAAATGGCGGGATTAGATCCTAGAGCTGAAGATCGCGAGCTTAAGAACCACTTGCTAAGAAAGTATAGCGGGTACTTAGGTAGCTTGAAGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAACTTCCTAAAGATGCAAGGCAAAAGCTTCTTAACTGGTGGGACTTACACTATAAATGGCCCTATCCTTCGGAATCGGAGAAGATGGCACTGGCAGAATCGACTGGGTTGGACCAGAAGCAAATAAACAATTGGTTCATAAATCAAAGGAAGAGACACTGGAAGCCATCAGAAGATATGCAATTTATGGTGATGGAAGGCCTTCATCAACATCAACACAATCCCCTTCTCTATATGGACTCCCACTATATGCCTGATGCTCACTACCGTCTAGGACCATGA 1122 0.4581 MAHIAGANSAALPGEFQFKLLVVIILMEEYSKQVMMRESTCSRPNFLYSFSTVGGSSHHHHQSGGSESRQPVKTEANTSITNNHSQIFHHPLITTHGGGISQTSSDEVESLKAEIAAHPHYTNLVEAYINCHKVGAPPEVAARLTEARQEFEARQRSLAGSRETCKDPELDRFMEAYYDMLVKYEEELTRPFQEAMDFIRNIQAQLNMLSDNGPVRIFPEDKSNGVGSCEEDEDNSGGEAEMAGLDPRAEDRELKNHLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLNWWDLHYKWPYPSESEKMALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGLHQHQHNPLLYMDSHYMPDAHYRLGP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0879 373 SMART KNOX2_2 160 211 IPR005541 GO:0003677|GO:0005634
Mibi05g0879 373 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Mibi05g0879 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 343 - -
Mibi05g0879 373 SMART HOX_1 275 340 IPR001356 GO:0003677
Mibi05g0879 373 MobiDBLite consensus disorder prediction 219 244 - -
Mibi05g0879 373 SMART ELK_2 253 274 IPR005539 GO:0003677
Mibi05g0879 373 Pfam KNOX1 domain 111 152 IPR005540 GO:0003677|GO:0005634
Mibi05g0879 373 SMART KNOX1_2 109 153 IPR005540 GO:0003677|GO:0005634
Mibi05g0879 373 SUPERFAMILY Homeodomain-like 274 345 IPR009057 -
Mibi05g0879 373 Pfam KNOX2 domain 164 209 IPR005541 GO:0003677|GO:0005634
Mibi05g0879 373 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Mibi05g0879 373 Pfam ELK domain 253 274 IPR005539 GO:0003677
Mibi05g0879 373 CDD homeodomain 285 337 IPR001356 GO:0003677
Mibi05g0879 373 Gene3D - 278 340 - -
Mibi05g0879 373 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Mibi05g0879 373 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Mibi05g0879 373 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0879 Mibi-ChrMibi05 8189337 8194062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0879 72 373 Homeobox Transcription Factor Family AT4G08150 66.013 3.24e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi05g0879 KNOX2 1.4e-22 No_clan