Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0859 ATGCTCGTGACATTACTATTTCAGGCAGATAGGGATGATTGGAGCAGCGTTTGTGGCCCTGAATATGAAAAGAACAAAGAGAAACTCAACAGAAGCAGTGATGACAAAGATTCATCAGCAGCAGCTGCAAAATGGAAGTGTTCAGATGAGGCGAAGTTGATGCAAAAAATGAGCCAAGAAAGTAATAGTCCCACATGGCAACACCAACTAGTACGACGAGGACCCTCTAATAGCACCAATAGGGTTTGTGCAGATTGCAACACCACCAGTACTCCTCTTTGGAGGACTGGCCCTAATGGTCCCAAGTCACTTTGCAATGCTTGTGGGATTAGGCAGAGGAAAGCAAGAAAGGCAATGGAAGAAGCTGGATGGTGCGTAAATACCACCAGAATAATGCATAAGAAGGAGAAGGAGAGACAAGTAGTAATAAATAAGAACAAGTCTCAATCTCGAGGGAGAAGGATTGGATTCACTCTCAGAAGAAATGGATCTGTCGTTTTTCAGCAACCACTGTTGCCACGGGATGAGGTTCTTGAAGGAGCTTTGCTTCTCATGTACTTATCTTGTCGCTTTATTCCCTATTAG 585 0.4393 MLVTLLFQADRDDWSSVCGPEYEKNKEKLNRSSDDKDSSAAAAKWKCSDEAKLMQKMSQESNSPTWQHQLVRRGPSNSTNRVCADCNTTSTPLWRTGPNGPKSLCNACGIRQRKARKAMEEAGWCVNTTRIMHKKEKERQVVINKNKSQSRGRRIGFTLRRNGSVVFQQPLLPRDEVLEGALLLMYLSCRFIPY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0859 194 MobiDBLite consensus disorder prediction 58 78 - -
Mibi05g0859 194 CDD ZnF_GATA 82 114 IPR000679 GO:0006355|GO:0043565
Mibi05g0859 194 Pfam GATA zinc finger 83 117 IPR000679 GO:0006355|GO:0043565
Mibi05g0859 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 76 119 - -
Mibi05g0859 194 SMART GATA_3 77 137 IPR000679 GO:0006355|GO:0043565
Mibi05g0859 194 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 24 191 - -
Mibi05g0859 194 ProSitePatterns GATA-type zinc finger domain. 83 108 IPR000679 GO:0006355|GO:0043565
Mibi05g0859 194 ProSiteProfiles GATA-type zinc finger domain profile. 77 113 IPR000679 GO:0006355|GO:0043565
Mibi05g0859 194 Gene3D - 77 155 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0859 Mibi-ChrMibi05 8055287 8055965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0859 76 114 C2C2-Gata Transcription Factor Family AT5G56860 79.487 1.40e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi05g0859 GATA 8.9e-17 CL0167