LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g0848	ATGGAGGGAGTGAGAGTGAAGGCAGAAGAAACGGTGGCAGCATGTGGAGCTGGTTCAACTTCTCCTTCATCTTCTGCTTCAAGTGTCTCTCCTCAACCCATGGAAGGGCTTCATGATATGGGTCCTCCTCCATTTCTTGTTAAGACCTTTGAAATGGTGGAAGATCCTTCCACTGATCCTGTTGTTTCTTGGAGCCTCGCTCGTAATAGCTTCATTGTCTGGGATTCTCACAAGTTCTCCACCACCATTCTTCCTCGCTACTTCAAGCACAACAACTTTTCCAGCTTCATTCGCCAGCTCAACACTTATGGATTTCGAAAAGTTGATCCTGATCGATGGGAATTTGCAAACGAACGGTTTTTGGGTGGACAGAAGCACTTATTGAAGACAATCAAGAGAAGAAGGAATGTCTCTCAGGGTGTACATCAAGAACGAGGCATTGCGTGTGTTGAAGTGGGGCAATACGGATTTGAAGGTGAGCTTGACAGGTTGAGAAGAGATAGGACAGTAATCATGGCAGAAATTGTGAAATTGAGACAGCAACAGCAGAATTCACGGTCACAACTTATTACTATGGAGGAAAGATTACAAACCACAGAGAAGAAACAGCAACAAATACTCACTTTCTTGGCCAAAGCACTGAACAACCCAACTTTCATACAACAACTTTCCCAGAGAAATGCCCAAAACAGAGAATTATTTGGTGTTGATATCAGGCGAAAGAGGAGACTAACTGCTAGCCCAAGTGTGGAGAATTTACAGGATGATCCTGTGACTGTGGCAGTGCTTAGTGAACCATTGGTGGACTATTCAACAAATGAACAGGAAGAGTTGGCAACTATAGAATCTGAGATAGAGACTTATTTCTCAGCTCCTCTTGATAATGAATCAAGTAGTGACAAGAAAGAGCCGGTATCAAGTTCAATTCTTACACCTAGTGGAAGCAATCTGGGCTCAATGAGTGATACAATATGGGAAGATTTGCTGAATGAAGATTTAGTTCATGGTAATCCAGATGAGGAAATTATATTTGGTGATCAGTCCCAAACTGATGCTCCAGCCGAAGACTTGGTAGCAAAGTCTGATGAGTGGGCTTCAGGTTTGGAGGACTTGGTAGATCAATTGGGTTTTCTTGGGTCTAGACCCCAGTAA	1152	0.4332	MEGVRVKAEETVAACGAGSTSPSSSASSVSPQPMEGLHDMGPPPFLVKTFEMVEDPSTDPVVSWSLARNSFIVWDSHKFSTTILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANERFLGGQKHLLKTIKRRRNVSQGVHQERGIACVEVGQYGFEGELDRLRRDRTVIMAEIVKLRQQQQNSRSQLITMEERLQTTEKKQQQILTFLAKALNNPTFIQQLSQRNAQNRELFGVDIRRKRRLTASPSVENLQDDPVTVAVLSEPLVDYSTNEQEELATIESEIETYFSAPLDNESSSDKKEPVSSSILTPSGSNLGSMSDTIWEDLLNEDLVHGNPDEEIIFGDQSQTDAPAEDLVAKSDEWASGLEDLVDQLGFLGSRPQ	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g0848	383	MobiDBLite	consensus disorder prediction	13	36	-	-
	Mibi05g0848	383	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g0848	383	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	31	273	IPR027725	-
	Mibi05g0848	383	SMART	hsfneu3	41	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g0848	383	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g0848	383	SUPERFAMILY	"Winged helix" DNA-binding domain	41	134	IPR036390	-
	Mibi05g0848	383	MobiDBLite	consensus disorder prediction	292	313	-	-
	Mibi05g0848	383	MobiDBLite	consensus disorder prediction	16	32	-	-
	Mibi05g0848	383	FunFam	Heat shock transcription factor 1	38	135	-	-
	Mibi05g0848	383	Gene3D	-	38	135	IPR036388	-
	Mibi05g0848	383	PRINTS	Heat shock factor (HSF) domain signature	96	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g0848	383	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g0848	383	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mibi05g0848	383	Coils	Coil	161	195	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g0848	Mibi-ChrMibi05	7954394	7955960	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g0848	31	382	HSF	AT2G26150	52.394	5.91e-127	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mibi05g0848		HSF_DNA-bind	3.8e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi05g0848	05	7954394	7955960	Mibi05g0848	05	7954394	7955960	ECH