Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0843 ATGTTATGGATGCGTGCTTCCCACACTCAAATGGAGTGGGCAGTGCGTATTATGCTGTATAAAATTGCTGATTTACTTATTTATATATCATTTTTTGCAATCATGGCTGGAATCACACCAGAGGGAACACAATTTGATGCTCGTCAATTTGATGCTAAGATGAATGAGTTGCTTGGATCTGATGGTCAAGACTTCTTTACTAGTTACGATGAAGTTTATGAAAGCTTTGATGCTATGGGATTGCAAGAGAACCTCCTCAGGGGTATTTATGCATATGGTTTTGAGAAGCCTTCTGCGATCCAGCAAAGGGGAATTGTACCTTTCTGCAAGGGTCTTGACGTAATTCAGCAAGCCCAATCTGGGACTGGAAAAACTGCGACTTTCTGCTCTGGAATATTGCAGCAGCTTGATTATAGCTTAGTTGAATGCCAGGCTCTGGTACTTGCTCCCACCCGTGAACTTGCTCAACAAATTGAGAAGGTCATGCGAGCACTAGGTGATTATCTTGGAGTTAAGGTTCACGCATGTGTGGGTGGGACCAGTGTTCGTGAAGACCAACGCATCCTTTCAAGTGGAGTCCATGTCGTCGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGGAGACAATCTCTGCGCCCTGATAATATTAAAATGTTTGTGTTGGATGAGGCAGACGAGATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTTCTGCCACCAAAAATTCAGGTTGGTGTTTTCTCTGCCACCATGCCACCTGAGGCCTTGGAGATCACGAGGAAGTTCATGAACAAACCTGTGAGGATTCTGGTGAAACGTGATGAGCTTACCCTAGAGGGTATCAAGCAATTTCATGTCAATGTTGATAAGGAGGAATGGAAGCTTGAGACCCTTTGTGATCTTTATGAGACCTTGGCAATCACCCAAAGTGTTATCTTTGTGAACACTAGGCGCAAGGTGGACTGGCTGACAGACAAGATGCGAAGCCGAGATCACACAGTTTCAGCCACCCATGGAGATATGGACCAGAACACTAGGGATATCATTATGCGTGAATTTCGTTCCGGTTCCTCCCGTGTGCTAATCACCACAGACCTTTTGGCTCGTGGTATCGATGTCCAGCAAGTCTCACTTGTGATTAACTATGATCTTCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGAAGAAAAGGTGTTGCTATCAACTTTGTGACAAGGGATGATGAGAGGATGCTGTTTGACATCCAGAGGTTTTATAATGTGGTGATTGAGGAGCTTCCAGCCAATGTTGCTGATCTTCTTTGA 1344 0.4479 MLWMRASHTQMEWAVRIMLYKIADLLIYISFFAIMAGITPEGTQFDARQFDAKMNELLGSDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0843 447 CDD SF2_C_DEAD 287 417 - -
Mibi05g0843 447 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 275 IPR014001 -
Mibi05g0843 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 428 IPR027417 -
Mibi05g0843 447 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 447 IPR001650 -
Mibi05g0843 447 Gene3D - 64 282 IPR027417 -
Mibi05g0843 447 CDD DEADc_EIF4A 78 276 - -
Mibi05g0843 447 PANTHER RNA HELICASE 64 431 - -
Mibi05g0843 447 FunFam Eukaryotic initiation factor 4A-II 62 281 - -
Mibi05g0843 447 SMART ultradead3 93 290 IPR014001 -
Mibi05g0843 447 Pfam DEAD/DEAH box helicase 99 260 IPR011545 GO:0003676|GO:0005524
Mibi05g0843 447 FunFam Eukaryotic initiation factor 4A-III 282 447 - -
Mibi05g0843 447 SMART helicmild6 327 408 IPR001650 -
Mibi05g0843 447 Pfam Helicase conserved C-terminal domain 300 408 IPR001650 -
Mibi05g0843 447 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 74 102 IPR014014 GO:0003724
Mibi05g0843 447 Gene3D - 283 447 IPR027417 -
Mibi05g0843 447 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 221 229 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0843 Mibi-ChrMibi05 7922159 7924891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0843 35 447 Eukaryotic Initiation Factors Gene Family AT1G72730 89.614 0.0 773
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0843 05 7922159 7924891 Mibi05g0843 05 7922159 7924891 ECH