LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g0837	ATGGAGGATCTCGAGGAGGAAGAGAAATTGGAAGAGGAGGCGCTTGGGTCGAGTTTGACTATGGAGAAGGTTGCGGCGGCCAAGAAGTTCATTGAGAATCACTACAAAAATCAGATGAAGAACATCCAAGAGCGCAAGGAGAGACGTTGGATTTTAGAAAGGAAGTTAGCTTCCTCAGATGTGCCTACTGAGGAAAGGATCAACCTCATCAAAGATTTAGAGAGAAAGGAGACAGAATATATGCGATTGAAAAGACACAAGATATGTGTTAATGATTTTGAGCCTTTAACCATAATAGGAAGAGGGGCCTTTGGGGAGGTTAGATTATGTCGGGAGAAGAAATCTGGAAACATCTATGCCATGAAAAAGCTGAAGAAAACTGAAATGCTCAAGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTTGCCAGCCATTGCATAGTGAAACTTTACTACTCATTTCAGGACACTGAATACTTATATTTAATTATGGAATATCTGCCTGGGGGTGACATGATGACTCTGCTGATGAGAGAAGACACTTTAAGTGAGAGTGTTGCTAGGTTTTACATCGCACAAAGTGTTCTGGCCATAGAGTCTATTCATAAACACAATTATATCCATAGGGATATTAAACCAGATAATCTACTTTTAGATATAACTGGTCATATGAAGCTCTCAGATTTTGGGCTTTGCAAGCCTCTTGAATTTACTACCCTGTCTACACTTCATGAGAATCAGACCATGGATGATGAAAATTTATCAGAGCCAATGGATATTGATGGGTGCTTTCCTGATGCGGACAATCGGAGCAGCTGGAGAAGTCCACGTGAACAACTCCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCTACTGTGGGAACACCAGACTACATTGCTCCTGAAGTGCTGCTGAAAAAAGGATATGGGATGGAATGTGACTGGTGGTCATTAGGGGCAATTATGTATGAAATGCTGGTTGGTTACCCTCCATTTTACTCAGATGACCCCATAACCACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAAATTTCCGGAAGATGCACAGTTGACACTTGAGGCCAAGGATCTAATATGCAGACTGCTGTGTGATGTTGACCATAGGTTAGGTACCCATGGAGCTAATGAAATCAAGGCTCATCCTTGGTTTAATGGTGTGGAGTGGGATAAACTGTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGGGAGCTGGACACCCAAAACTTCATGAAATTTGATGAAGTAGATCCACCAACAGCAGCAATAACTGGATCAGGTCCTTCACGAAAGATGCTTCTAACACCCAAAGACCTAAATTTTGTTGGCTACACCTACAAGAACTTTGATGCTGTTAAAGAAGGGCTTCGCCAGTCTTTTGCTGATTCCATGCAAGAATACTCTTCTAAACGGGCAGCTGAGGAAACAAGTTTACACATGCTTGCTTCGTCTGGGGATCCCATGTTACCATGA	1527	0.4237	MEDLEEEEKLEEEALGSSLTMEKVAAAKKFIENHYKNQMKNIQERKERRWILERKLASSDVPTEERINLIKDLERKETEYMRLKRHKICVNDFEPLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKTEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDMMTLLMREDTLSESVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDITGHMKLSDFGLCKPLEFTTLSTLHENQTMDDENLSEPMDIDGCFPDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLKFPEDAQLTLEAKDLICRLLCDVDHRLGTHGANEIKAHPWFNGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPTAAITGSGPSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSFADSMQEYSSKRAAEETSLHMLASSGDPMLP	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g0837	508	Gene3D	Transferase(Phosphotransferase) domain 1	177	242	-	-
	Mibi05g0837	508	Gene3D	Transferase(Phosphotransferase) domain 1	299	420	-	-
	Mibi05g0837	508	FunFam	Non-specific serine/threonine protein kinase	419	429	-	-
	Mibi05g0837	508	CDD	STKc_NDR_like	91	465	-	-
	Mibi05g0837	508	Pfam	Protein kinase domain	94	242	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi05g0837	508	Pfam	Protein kinase domain	292	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi05g0837	508	ProSiteProfiles	Protein kinase domain profile.	93	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi05g0837	508	SMART	serkin_6	93	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi05g0837	508	FunFam	Non-specific serine/threonine protein kinase	299	418	-	-
	Mibi05g0837	508	SMART	pkinase_C_6	401	466	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Mibi05g0837	508	Pfam	Protein kinase C terminal domain	419	464	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Mibi05g0837	508	FunFam	Non-specific serine/threonine protein kinase	54	176	-	-
	Mibi05g0837	508	FunFam	Non-specific serine/threonine protein kinase	177	244	-	-
	Mibi05g0837	508	PANTHER	SERINE/THREONINE-PROTEIN KINASE	14	444	-	-
	Mibi05g0837	508	ProSiteProfiles	AGC-kinase C-terminal domain profile.	401	474	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Mibi05g0837	508	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Mibi05g0837	508	ProSitePatterns	Protein kinases ATP-binding region signature.	99	122	IPR017441	GO:0005524
	Mibi05g0837	508	SUPERFAMILY	Protein kinase-like (PK-like)	76	446	IPR011009	-
	Mibi05g0837	508	Gene3D	Phosphorylase Kinase; domain 1	71	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g0837	Mibi-ChrMibi05	7839454	7846731	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g0837	1	507	AGC Kinase Gene Family	AT4G33080	80.000	0.0	835

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Mibi05g0837		Pkinase	3e-42	CL0016