Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0808 ATGGCTTCTCCCAATTCTGCTTTGAGCGATGTTGATCAAACGAACAGTTTGAAGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTTTCTGAAATAAGACTTCCTAACAGCCGTGAACGCATATGGCTTGGCTCTTATGATTCTCCTGAAAAAGCTGCTCGTGCCTTTGATGCAGCCCTCTTTTGCCTACGTGGCGATCGTGCCAATTTCAACTTTCCTGACACTCCTTTCCTCTTTCATATTCCTCATCATCAACCTCTTACACATCATCAGATTCAACTTCTTGCTTCTTCCTTCGCCAATCAGTTCAACCACCAGCAGCCGCCACCGCCGCCGCCAGAGACACCCCATGAAACAGAATTTCATGTGTCAATGTCGGAGACAACTGGTGGTTATAATAATAGTACTTGTACTTCTTCATCGTCCTCTTGTAATGTGCAAGTGGAAGATGAGAGCACTATAGATTGGTCATTTTTGAATTCTTTGGATTCCAATGATGACTTTGGTGATGTCTCCGTTGACTGTGGTCCTTTCTCTGAGTTGGATTACTTTGGCCAGTTTGGTGAGTCAGCCACGTCCGAGTTATCTGTGCCTACTTTCGACTACAATGCCCATGAACATCAGTACGAGGATGCCTTTTCTCATAATTATTCATTCCTTTGGAACTTCGGTTACGAGTGTTCATAG 693 0.443 MASPNSALSDVDQTNSLKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGDRANFNFPDTPFLFHIPHHQPLTHHQIQLLASSFANQFNHQQPPPPPPETPHETEFHVSMSETTGGYNNSTCTSSSSSCNVQVEDESTIDWSFLNSLDSNDDFGDVSVDCGPFSELDYFGQFGESATSELSVPTFDYNAHEHQYEDAFSHNYSFLWNFGYECS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0808 230 FunFam Ethylene-responsive transcription factor 2 18 76 - -
Mibi05g0808 230 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Mibi05g0808 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 164 - -
Mibi05g0808 230 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Mibi05g0808 230 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Mibi05g0808 230 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Mibi05g0808 230 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Mibi05g0808 230 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Mibi05g0808 230 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Mibi05g0808 230 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Mibi05g0808 230 PIRSF PTI6 120 221 IPR017392 GO:0003700
Mibi05g0808 230 PIRSF PTI6 3 84 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0808 Mibi-ChrMibi05 7632227 7632919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0808 18 189 AP2-EREBP Transcription Factor Family AT1G74930 49.425 4.84e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi05g0808 AP2 9.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0808 05 7632227 7632919 Mibi05g0808 05 7632227 7632919 ECH